| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 17,366,910 – 17,367,002 |
| Length | 92 |
| Max. P | 0.579570 |
| Location | 17,366,910 – 17,367,002 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 74.34 |
| Mean single sequence MFE | -40.38 |
| Consensus MFE | -21.30 |
| Energy contribution | -22.47 |
| Covariance contribution | 1.17 |
| Combinations/Pair | 1.21 |
| Mean z-score | -1.60 |
| Structure conservation index | 0.53 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.579570 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17366910 92 + 22224390 ----UGCCAUUGCCGCCUGCAAUC-----------------------C-GGUGAUUGGGUCCCGGAUCCUCGGCGGCUCGUAUCCUGGCGCAGCUAAGUAUCCUGCGACCACACGAGGCU ----.(((...((((((....(((-----------------------(-((.(((...)))))))))....))))))((((....((((((((.........))))).))).))))))). ( -40.80) >DroPse_CAF1 102526 119 + 1 CUGUUCCCGUUCCCGUCGCCGACACCGUUCGAUGAUUUAAAUUUAGAU-GAUGAUUCGGCCCUGGAUCCUCGGCGGCCCGUAUCCGGGCGCAGCUGAGGAUGCGACGACCGCAGGAGGCG ..((..((((...(((((((((((.((((..(..........)..)))-).))..)))))...(.(((((((((.(((((....)))))...))))))))).)))))...)).))..)). ( -47.90) >DroSec_CAF1 83945 92 + 1 ----UGCCAUUGCCGCCUGCAAUC-----------------------C-GGUGAUUGGGCCCCGGAUCCUCGGCGGCUCGUAUCCUGGCGCAGCUGAGUAUCCUGCGACCACAGGAGGCU ----.(((...((((((....(((-----------------------(-((.(......).))))))....)))))).....(((((.(((((.........)))))....)))))))). ( -40.80) >DroEre_CAF1 84611 92 + 1 ----UGCCGUUCCCACCUGCAAUC-----------------------C-GGUGAUUGGGUCCCGGAUCCUCGGCGGCUCGUAUCCUGGCGCAGCUGAGUAUCCGGCGACCACAGGAGGCU ----.(((..(((((((.......-----------------------.-))))..((((((((((((.((((((.((.(........).)).)))))).)))))).)))).)))))))). ( -42.80) >DroYak_CAF1 75778 92 + 1 ----UGCCAUUCCCACUCGCGAUC-----------------------C-GGUGAUUGGGUCCCGGAUCCUCGGCGGCUCGUAUCCUGGCGCAGCUGAGUAUCCUGCGGCCACAGGAGGCG ----.(((......((((((...(-----------------------(-((.(((((((((((((....)))).)))))).)))))))....)).)))).(((((......)))))))). ( -37.40) >DroAna_CAF1 85758 89 + 1 ----CACCACUCC----UGCCCCC-----------------------CAGCUGAUUGGGUCCUGGAUCCUCGGCUGCCCUGAUCCUGGCACAGCUCAGUAUCCUCCUGCCGCAGGAGGCU ----.....((((----(((..((-----------------------(((....)))))....((((.((.(((((.((.......))..))))).)).)))).......)))))))... ( -32.60) >consensus ____UGCCAUUCCCGCCUGCAAUC_______________________C_GGUGAUUGGGUCCCGGAUCCUCGGCGGCUCGUAUCCUGGCGCAGCUGAGUAUCCUGCGACCACAGGAGGCU .....(((.....((((................................))))....((((..((((.((((((.(((........)))...)))))).))))...))))......))). (-21.30 = -22.47 + 1.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:17 2006