| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 17,365,336 – 17,365,429 |
| Length | 93 |
| Max. P | 0.951723 |
| Location | 17,365,336 – 17,365,429 |
|---|---|
| Length | 93 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | forward |
| Mean pairwise identity | 87.40 |
| Mean single sequence MFE | -20.60 |
| Consensus MFE | -18.11 |
| Energy contribution | -18.67 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.10 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.88 |
| SVM decision value | 1.41 |
| SVM RNA-class probability | 0.951723 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17365336 93 + 22224390 ACACGAAAAAAAAAAUG--AAAAGCAUGCGGCAUCCACGACAAGAUCGAUUCUACUGAAACCGCAUCCAUGAAUCCAUCGCCAUGGCGAACGUGA .((((............--....(.((((((......(((.....))).(((....))).)))))).).........((((....)))).)))). ( -22.00) >DroSec_CAF1 82415 87 + 1 ACACGAAAAAAA--------AAAGCAUGCGGCAUCCACGACAAGAUCGAUUCUACUGAAACCGCAUCCAUGAAUCCAUCGCCAUGGCGAACGUGA .((((.......--------...(.((((((......(((.....))).(((....))).)))))).).........((((....)))).)))). ( -22.00) >DroSim_CAF1 71987 86 + 1 ACACGAAAA-AA--------AAAGCAUGCGGCAUCCACGACAAGAUCGAUUCUACUGAAACCGCAUCCAUGAAUCCAUCGCCAUGGCGAACGUGA .((((....-..--------...(.((((((......(((.....))).(((....))).)))))).).........((((....)))).)))). ( -22.00) >DroEre_CAF1 83087 95 + 1 ACACGAAAAAAAUAAAGGAAAAAGCAUGCGGCAUCCACGACAAGAUCGAUUCUACUGAAACCGCAUCCAUGAAUCCAUCGCCAUGGCGAACGUGA .((((...........(((......((((((......(((.....))).(((....))).)))))).......))).((((....)))).)))). ( -24.12) >DroYak_CAF1 74267 89 + 1 ACACGAAAAAAA------AAAGAGCAUGCGGCAUCCACGACAAGAUCGAUUCUACUGAAACCGCAUCCAUGAAUCCAUCGCCAUGGCGAACGUGA .((((.......------.....(.((((((......(((.....))).(((....))).)))))).).........((((....)))).)))). ( -22.00) >DroAna_CAF1 84606 77 + 1 AACCGACAAAAA------AAAAAGCAUGUGGCAUCCGCGACAAGAUCGAUUCUACUGAAACCGCAUCCA------CAUCGAC------GGCGUGA ..(((.......------........(((.((....)).)))...(((((.....((......))....------.))))))------))..... ( -11.50) >consensus ACACGAAAAAAA_______AAAAGCAUGCGGCAUCCACGACAAGAUCGAUUCUACUGAAACCGCAUCCAUGAAUCCAUCGCCAUGGCGAACGUGA .((((..................(.((((((......(((.....))).(((....))).)))))).).........((((....)))).)))). (-18.11 = -18.67 + 0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:16 2006