| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 17,363,168 – 17,363,273 |
| Length | 105 |
| Max. P | 0.766035 |
| Location | 17,363,168 – 17,363,273 |
|---|---|
| Length | 105 |
| Sequences | 6 |
| Columns | 117 |
| Reading direction | reverse |
| Mean pairwise identity | 80.68 |
| Mean single sequence MFE | -29.12 |
| Consensus MFE | -25.47 |
| Energy contribution | -25.80 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.08 |
| Mean z-score | -1.45 |
| Structure conservation index | 0.87 |
| SVM decision value | 0.52 |
| SVM RNA-class probability | 0.766035 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17363168 105 - 22224390 UAUUAUUGCUGGCAUCUGCGGCAUUAGCAGCGCGUGUUUGAGUGCCGCUUUAACUAAGCACUCGUUAAUCAAUGUCGCCAGUGAGUCUCU-----UUUUUUCC-CCUCCAC------ .....(..(((((....((((((((.(((.....)))...)))))))).(((((.........)))))........)))))..)......-----........-.......------ ( -27.40) >DroPse_CAF1 98583 95 - 1 ---CAUUG-UGGCAU-UGUGGCAUUAGCAGCGCGUGUCUGAGUGCCGCUUUAACUAAGCACUCGUUAAUCAAUGUCGCCACAGAGUCCCAGUGCCCAGU-C---------------- ---(((((-.(((.(-((((((((((((.((((........)))).((((.....))))....)))))).......))))))).))).)))))......-.---------------- ( -29.91) >DroSec_CAF1 80331 106 - 1 UAUUAUUGCUGGCAUCUGCGGCAUUAGCAGCGCGUGUUUGAGUGCCGCUUUAACUAAGCACUCGUUAAUCAAUGUCGCCAGUGAGUCUCU-----UCUUUCCACCAUACAU------ .....(..(((((....((((((((.(((.....)))...)))))))).(((((.........)))))........)))))..)......-----................------ ( -27.40) >DroEre_CAF1 80946 112 - 1 UAUUAUUGCUGGCAUCUGCGGCAUUAGCAGCGCGUGUUUGAGUGCCGCUUUAACUAAGCACUCGUUAAUCAAUGUCGCCAGCGAGUCUCU-----UUUCUCCUCCAUAUAUACACAC .....((((((((....((((((((.(((.....)))...)))))))).(((((.........)))))........))))))))......-----...................... ( -29.60) >DroYak_CAF1 72064 103 - 1 UAUUAUUGCUGGCAUCUGCGGCAUUAGCAGCGCGUGUUUGAGUGCCGCUUUAACUAAGCACUCGUUAAUCAAUGUCGCCAGCGAGUCUCU-----CCUUUCCUCCAUA--------- .....((((((((....((((((((.(((.....)))...)))))))).(((((.........)))))........))))))))......-----.............--------- ( -29.60) >DroPer_CAF1 95807 95 - 1 ---CAUUG-UGGCAU-UGUGGCAUUAGCAGCGCGUGUCUGAGUGCCGCUUUAACUAAGCACUCGUUAAUCAAUGUCGCCACAGAGUCCCAGUGGCCAGU-C---------------- ---(((((-.(((.(-((((((((((((.((((........)))).((((.....))))....)))))).......))))))).))).)))))......-.---------------- ( -30.81) >consensus UAUUAUUGCUGGCAUCUGCGGCAUUAGCAGCGCGUGUUUGAGUGCCGCUUUAACUAAGCACUCGUUAAUCAAUGUCGCCAGAGAGUCUCU_____CAUUUCC__CAUA_________ .....((((((((....((((((((.(((.....)))...)))))))).(((((.........)))))........))))))))................................. (-25.47 = -25.80 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:16 2006