Locus 6934

Sequence ID X_DroMel_CAF1
Location 17,358,687 – 17,358,795
Length 108
Max. P 0.927540
window11336

overview

Window 6

Location 17,358,687 – 17,358,795
Length 108
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 87.07
Mean single sequence MFE -30.56
Consensus MFE -24.40
Energy contribution -24.92
Covariance contribution 0.52
Combinations/Pair 1.10
Mean z-score -2.06
Structure conservation index 0.80
SVM decision value 1.18
SVM RNA-class probability 0.927540
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17358687 108 - 22224390
UGUCAUAAAGCUUAUUGCAAUUUGUGCUGCUGGCCCGCCCAGGCCACAGCAGUGAGCCAAA-AAACUACAUACAGUGGGGCAUCCAUAAACUGCACG--AGCUGUCCAACA-
.((.....(((((..((((.(((((((((.(((((......))))))))).(.(((((...-..(((......)))..))).)))))))).)))).)--)))).....)).- ( -33.50)
>DroSec_CAF1 75509 95 - 1
UGUCAUAAAGCUCUUUGCAAUUUGUGCUGCUGGCCCGCCCAAG-------------CCAAA-AAACUACAUACAGUGGGGCCUCCAUAAACUGUACG--AGCUGUCCAACA-
.((.....(((((..((((.((((((.....(((((((....)-------------)....-..(((......))).)))))..)))))).)))).)--)))).....)).- ( -25.30)
>DroSim_CAF1 65521 95 - 1
UGUCAUAAAGCUCUUUGCAACUUGUGCUGCUGGCCCGCCCAGG-------------CCAAA-AAACUACAUACAGUGGGGCCUCCAUAAACUGCACG--AGCUGUCCAACA-
.((.....(((((..((((..(((((..(((((((......))-------------))...-...((((.....)))))))...)))))..)))).)--)))).....)).- ( -28.10)
>DroEre_CAF1 76181 109 - 1
UGUCAUAAAGCUCUUUGCAAUUUGUGCUGCUGGCCCGCCCAGGCCACGGCAGUGAGCCAAA-AAACUACAUACAGUGGGGCCUCCAUAAACUGCACC--AGCUGUCCCGCAA
(((.....((((...((((.((((((.....(((((.....((((((....))).)))...-..(((......))).)))))..)))))).))))..--)))).....))). ( -34.30)
>DroYak_CAF1 67261 111 - 1
UGUCAUAAAGCUCUUUGCAAUUUGUGCUGCUGGCCCGCCCAGGCCACAGCAGUGAGUCAAAAAAACUACAUACAGUGGGGCCUCCAUAAACUGCACCCAAGCUGUCCCACA-
..((((...((.....))......(((((.(((((......))))))))))))))...................(((((((...........((......)).))))))).- ( -31.60)
>consensus
UGUCAUAAAGCUCUUUGCAAUUUGUGCUGCUGGCCCGCCCAGGCCAC_GCAGUGAGCCAAA_AAACUACAUACAGUGGGGCCUCCAUAAACUGCACG__AGCUGUCCAACA_
(((.....((((...((((.((((((.....(((((.....((((((....))).)))......(((......))).)))))..)))))).))))....)))).....))). (-24.40 = -24.92 +   0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:15 2006