Locus 6932

Sequence ID X_DroMel_CAF1
Location 17,342,783 – 17,342,884
Length 101
Max. P 0.646130
window11333

overview

Window 3

Location 17,342,783 – 17,342,884
Length 101
Sequences 4
Columns 104
Reading direction forward
Mean pairwise identity 87.97
Mean single sequence MFE -20.52
Consensus MFE -13.48
Energy contribution -14.23
Covariance contribution 0.75
Combinations/Pair 1.00
Mean z-score -2.12
Structure conservation index 0.66
SVM decision value 0.23
SVM RNA-class probability 0.646130
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17342783 101 + 22224390
ACCAAGC---CACCUACAGAAAUACAUAUGUAUAUGUGCAUGCGUAUAUAGGGAGUUUAAGCCAAAAAAAAUAAUAGCCACAAGGCGUUGACAGACGAGGCAAA
...((((---..((((.....((((.((((((....)))))).)))).))))..))))..(((.............(((....)))(((....)))..)))... ( -23.80)
>DroSec_CAF1 60036 93 + 1
ACCAAGCAAGCACCUACAGAAAUA--------UAUGUUCGUGC--AUAUAGGGAGCAUAAGCCAAA-AAAAUAAUAGCCACAAGGCGUUGACAGACGAGGCAAA
.((......((((..(((......--------..)))..))))--......)).......(((...-.........(((....)))(((....)))..)))... ( -20.50)
>DroSim_CAF1 49854 93 + 1
ACCAAGCAAGCACCUACAGAAAUA--------UAUGUUCGUGC--AUAUAGGGAGCAUAAGCCAAA-AAAAUAAUAGCCACAAGGCGUUGACAGACGAGGCAAA
.((......((((..(((......--------..)))..))))--......)).......(((...-.........(((....)))(((....)))..)))... ( -20.50)
>DroEre_CAF1 60608 91 + 1
ACCAAGCA-GCACCUACAGAAAAA--------UAUGUUCGUGC--AUAUAGGGAGUAGAAGCCAA--AAAAUAAUAGCCACAAGGCGUUGACGGACGAGGAAAA
.((...((-((..((((......(--------(((((....))--)))).....)))).......--.........(((....)))))))..)).......... ( -17.30)
>consensus
ACCAAGCA_GCACCUACAGAAAUA________UAUGUUCGUGC__AUAUAGGGAGCAUAAGCCAAA_AAAAUAAUAGCCACAAGGCGUUGACAGACGAGGCAAA
.((......((((..(((................)))..))))........)).......(((.............(((....)))(((....)))..)))... (-13.48 = -14.23 +   0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:12 2006