Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 17,341,127 – 17,341,232 |
Length | 105 |
Max. P | 0.783460 |
Location | 17,341,127 – 17,341,232 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 75.55 |
Mean single sequence MFE | -22.12 |
Consensus MFE | -3.46 |
Energy contribution | -4.10 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.20 |
Mean z-score | -1.71 |
Structure conservation index | 0.16 |
SVM decision value | 0.56 |
SVM RNA-class probability | 0.783460 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17341127 105 - 22224390 ACAGUUACAAAAACAUAUUAUCCACAAUUAUU---AGUA-----------ACAAUACUGGUAGUAGAAUAUUUCCUUGCAAGAGC-ACAGCCUUAGCUAUUUUCAAGCUGCUGUCGCAGA ..........................((((((---((((-----------....))))))))))...................((-(((((...((((.......))))))))).))... ( -18.90) >DroSec_CAF1 58374 116 - 1 ACAGUUAUAAAAAUAUAUUAUCCACAACUAUU---GGUAAAUGUGCUCAAACAAUACUGGUUGUAGGUUAUUUACUUGCAAGAGC-CCAGCUUUAGCUAUUUUCAAGCUGCUCUCCCAGA .............((((((..(((.......)---))..))))))...........((((((((((((.....))))))))(((.-.((((((...........))))))..))))))). ( -24.40) >DroSim_CAF1 48184 116 - 1 ACAGUUAUAAAAACAUAUUAUCCACAACUAUU---GGUAAAUGUGCUCAAACAAUACUGGUUGUAGGUUAUUUACUUGCAAGAGC-CCAGCUUUAGCUAUUUUCAAGCUGCUCUCCCAGA .............((((((..(((.......)---))..))))))...........((((((((((((.....))))))))(((.-.((((((...........))))))..))))))). ( -26.10) >DroEre_CAF1 59009 115 - 1 UCGUAUAUAAAACCAUAUUAACCACAAUUAUU---GGUAGCUGUCUUCAGACUAU-CUUUAUAUCUGUUAUUUUCCUGCUGGACCCCUAGCUCUAGCUACUUUCAAGCUGCCC-CCCAGA ................................---((((((((((....)))...-.....................((((((........))))))........))))))).-...... ( -19.80) >DroYak_CAF1 49744 117 - 1 ACAUAUAUAAAAACAUAUUAACCACAAUUAUUGUUGGGAGCUGUGUUCAGAAUAU-CUUCUUAUCUUUUAUUUCCCUGCUUG--CCGUAGCUCUAGCUACUUUCAAGCUGCCCUUCCAGA .................................((((((((((....))).....-.....................(((((--..(((((....)))))...)))))....))))))). ( -21.40) >consensus ACAGUUAUAAAAACAUAUUAUCCACAAUUAUU___GGUAAAUGUGCUCAAACAAUACUGGUUGUAGGUUAUUUACUUGCAAGAGC_CCAGCUUUAGCUAUUUUCAAGCUGCUCUCCCAGA .............................................................................((.(((((....))))).))..........(((......))). ( -3.46 = -4.10 + 0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:11 2006