Locus 6930

Sequence ID X_DroMel_CAF1
Location 17,340,975 – 17,341,087
Length 112
Max. P 0.737610
window11331

overview

Window 1

Location 17,340,975 – 17,341,087
Length 112
Sequences 4
Columns 113
Reading direction reverse
Mean pairwise identity 98.22
Mean single sequence MFE -44.00
Consensus MFE -42.28
Energy contribution -41.90
Covariance contribution -0.38
Combinations/Pair 1.05
Mean z-score -1.86
Structure conservation index 0.96
SVM decision value 0.44
SVM RNA-class probability 0.737610
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17340975 112 - 22224390
CGAGAGAGCGCGAAAGAGAGCCGUGCGGCGUGAGA-CCGUUGGUGUCUGUUUUGCGUUUUCUGUUGCUUUCGAACUUUCGUCGUGAGCGGUUCGUUCGCUGUUUCGCGCGCGU
..(((((((((((((.(((((((.(((((....).-)))))))).))).))))))))))))).((((((.(((.......))).))))))..(((.(((......))).))). ( -46.80)
>DroSec_CAF1 58222 112 - 1
CGAGAGAGCGUGAAAGAGAGCCGUGCGGCGUGAGA-CCGUUGGUGUCUGUUUUGCGUUUUCUGUUGCUUUCGAACUUUCGUCGUGAGCGGUUCGUUCGCUGUUUCGCGCGCGU
..((((((((..(((.(((((((.(((((....).-)))))))).))).)))..)))))))).((((((.(((.......))).))))))..(((.(((......))).))). ( -44.60)
>DroSim_CAF1 48032 112 - 1
CGAGAGAGCGUGAAAGAGAGCCGUGCGGCGUGAGA-CCGUUGGUGUCUGUUUUGCGUUUUCUGUUGCUUUCGAACUUUCGUCGUGAGCGGUUCGUUCGCUGUUUCGCGCGCGU
..((((((((..(((.(((((((.(((((....).-)))))))).))).)))..)))))))).((((((.(((.......))).))))))..(((.(((......))).))). ( -44.60)
>DroEre_CAF1 58856 113 - 1
CGAGAGAGCGUGAAAGAGAGCCGUGCGGCGUGAGAACUGUUGGUGUCUGUUUUGCGUUUUCUGUUGCUUUCGAACUUUCGUCGUGAGCGGUUCGUUCGCUGUAUCGCGCGCGU
..((((((((..(((.(((((((.(((((....)..)))))))).))).)))..)))))))).((((((.(((.......))).))))))..(((.(((......))).))). ( -40.00)
>consensus
CGAGAGAGCGUGAAAGAGAGCCGUGCGGCGUGAGA_CCGUUGGUGUCUGUUUUGCGUUUUCUGUUGCUUUCGAACUUUCGUCGUGAGCGGUUCGUUCGCUGUUUCGCGCGCGU
..(((((((((((((.(((((((.(((((....)..)))))))).))).))))))))))))).((((((.(((.......))).))))))..(((.(((......))).))). (-42.28 = -41.90 +  -0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:10 2006