Locus 6928

Sequence ID X_DroMel_CAF1
Location 17,337,091 – 17,337,192
Length 101
Max. P 0.941196
window11328

overview

Window 8

Location 17,337,091 – 17,337,192
Length 101
Sequences 5
Columns 104
Reading direction forward
Mean pairwise identity 95.24
Mean single sequence MFE -18.58
Consensus MFE -16.50
Energy contribution -17.10
Covariance contribution 0.60
Combinations/Pair 1.00
Mean z-score -1.58
Structure conservation index 0.89
SVM decision value 1.32
SVM RNA-class probability 0.941196
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17337091 101 + 22224390
ACGACAACUCUA-UUUUUUUUUUCCAGGUUU--UUUUCUUUUUUCUUGUUUGCUGGUUGUUAAUGCAUUUCCACACGCAAAUGAAAUCGAAACCUAAAAAUCGG
............-............((((((--(.....((((..((((.((.(((.(((....)))...))))).))))..))))..)))))))......... ( -15.60)
>DroSec_CAF1 54268 100 + 1
ACGACAACUCUA-UUUU---UUUCCAGUUUUUUUUUUCUUUUUUCUUGUGUGUUGGUUGUUAAUGCAUUUCCACACGCAAAUGAAAUCGAAACCCAAAAAUCGG
............-....---...((.((((((..((((.((((..((((((((.((.(((....)))...))))))))))..))))..))))...)))))).)) ( -19.40)
>DroSim_CAF1 44122 98 + 1
ACGACAACUCUA-UUUU---UUUCCAGUUUU--UUUUCUUUUUUCUUGUGUGUUGGUUGUUAAUGCAUUUCCACACGCAAAUGAAAUCGAAACCCAAAAAUCGG
............-....---...((.(((((--(((((.((((..((((((((.((.(((....)))...))))))))))..))))..))))...)))))).)) ( -18.90)
>DroEre_CAF1 54796 100 + 1
ACGACAACUCUAAUUUU---UUUCCAGUUUU-GUUUUCUUUUUUCCUGUGUGUUGGUUGUUAAUGCAUUUCCACACGCAAAUGAAAUCGAAACCCAAAAAUCGG
.................---...((.(((((-(((((..((((...(((((((.((.(((....)))...)))))))))...))))..)))))...))))).)) ( -18.60)
>DroYak_CAF1 45557 99 + 1
ACGACAACUCUA-UUUU---UUUCCAGUUUU-GUUUUCUUUUUUCUUGUGUGUUGGUUGUUAAUGCAUUUCCACACGCAAAUGAAAUCGAAACCCAAAAAUCGG
............-....---...((.(((((-(((((..((((..((((((((.((.(((....)))...))))))))))..))))..)))))...))))).)) ( -20.40)
>consensus
ACGACAACUCUA_UUUU___UUUCCAGUUUU__UUUUCUUUUUUCUUGUGUGUUGGUUGUUAAUGCAUUUCCACACGCAAAUGAAAUCGAAACCCAAAAAUCGG
.......................((.(((((...((((...(((((((((((.(((.(((....)))...))))))))))..))))..))))....))))).)) (-16.50 = -17.10 +   0.60)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:07 2006