Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 17,336,523 – 17,336,637 |
Length | 114 |
Max. P | 0.691073 |
Location | 17,336,523 – 17,336,637 |
---|---|
Length | 114 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 90.24 |
Mean single sequence MFE | -36.86 |
Consensus MFE | -29.60 |
Energy contribution | -30.80 |
Covariance contribution | 1.20 |
Combinations/Pair | 1.06 |
Mean z-score | -1.52 |
Structure conservation index | 0.80 |
SVM decision value | 0.33 |
SVM RNA-class probability | 0.691073 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17336523 114 - 22224390 AGGGGGCUAGUUGCUGUAGGCUUAUCUGGCACGCGCGACUGCCCCAACAAGUGCAGUUCAAGUGGCAAAACGGUCAAAGUUUUCCUACUCACACUCACACUCG------CAGUUCGCCUU ..(((((.((((((.((..(((.....)))..))))))))))))).....(((.(((...(((((.(((((.......))))).)))))...))))))....(------(.....))... ( -38.10) >DroSec_CAF1 53726 107 - 1 AGGGGGCUAGUUGCUGUAGGCUUAUCUGGCACGCGCGACUGCCCCAACAAGUGCAGUUCAAGUGGCAAAACGGUCAAAGUUUUCCUACUCA------CACUCG------CAG-UCGCCUU ..(((((.((((((.((..(((.....)))..))))))))))))).....(((.(((...(((((.(((((.......))))).)))))..------.)))))------)..-....... ( -37.30) >DroSim_CAF1 43574 113 - 1 AGGGGGCUAGUUGCUGUAGGCUUAUCUGGCACGCGCGACUGCCCCAACAAGUGCAGUUCAAGUGGCAAAACGGUCAAAGUUUUCCUACUCACACUCACACUCG------CAG-UCGCCUU ..(((((.((((((.((..(((.....)))..))))))))))))).....(((.(((...(((((.(((((.......))))).)))))...))))))....(------(..-..))... ( -38.10) >DroEre_CAF1 54208 107 - 1 AGGGUGCCAGUUUCUGUAGGCUUAUCUGGCACGCGCGACUGCCCCAACAAGUGCAGUUCAAGUGGCAAAACGGUCAAAGUUUUCCUAUUUACACUCGC------------AC-UCGCCUU .(.(((((((.....(....)....))))))).)((((.((......)).(((((((..((((((.(((((.......))))).))))))..))).))------------))-))))... ( -31.90) >DroYak_CAF1 44989 119 - 1 AGGGGGCUAGUUUCUGUAGGCUUAUCUGGCACGCGCGACUGCCCCAACAAGUGCAGUUCAAGUGGCAAAACGGUCAAAGUUUUCCUAUUCACACUCGCACUUGGACUUGCAC-UCGCCUU ..(((((.((((..(((..(((.....)))..))).)))))))))....((((((((((((((((.(((((.......))))))).............)))))))).)))))-)...... ( -38.91) >consensus AGGGGGCUAGUUGCUGUAGGCUUAUCUGGCACGCGCGACUGCCCCAACAAGUGCAGUUCAAGUGGCAAAACGGUCAAAGUUUUCCUACUCACACUCACACUCG______CAG_UCGCCUU ..(((((.((((((.((..(((.....)))..))))))))))))).....(((.(((...(((((.(((((.......))))).)))))...))))))...................... (-29.60 = -30.80 + 1.20)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:05 2006