Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 17,336,291 – 17,336,388 |
Length | 97 |
Max. P | 0.997830 |
Location | 17,336,291 – 17,336,388 |
---|---|
Length | 97 |
Sequences | 3 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 78.52 |
Mean single sequence MFE | -10.63 |
Consensus MFE | -10.19 |
Energy contribution | -10.63 |
Covariance contribution | 0.45 |
Combinations/Pair | 1.07 |
Mean z-score | -1.67 |
Structure conservation index | 0.96 |
SVM decision value | 2.94 |
SVM RNA-class probability | 0.997830 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17336291 97 + 22224390 AAGUACUUAACAAGUUCAAUGUGCAUUUCAACUAUUUCGAGUGCAACUUAACUAGUCAAACCCCAUUUUUUCAUUUUCCACCUCUUUACAGCCCUUU .........((.((((.....(((((((.((....)).)))))))....)))).))......................................... ( -7.70) >DroSec_CAF1 53516 76 + 1 AAGUAUUUCACAAGUUCAAUGUGCAUUUCAACUAUUGGAAGUGCAACUUAACUAAUCAA---------------------UCUCCUUACAGCCCUUU ............((((.....((((((((........))))))))....))))......---------------------................. ( -11.20) >DroSim_CAF1 43372 76 + 1 AAGUAUUUCACAAGUUCAAUGUGCAUUUCAACUAUUUGAAGUGCAACUUAACUAAUCAA---------------------UCUCCUUACAGCCCUUU ............((((.....((((((((((....))))))))))....))))......---------------------................. ( -13.00) >consensus AAGUAUUUCACAAGUUCAAUGUGCAUUUCAACUAUUUGAAGUGCAACUUAACUAAUCAA_____________________UCUCCUUACAGCCCUUU ............((((.....((((((((((....))))))))))....))))............................................ (-10.19 = -10.63 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:03 2006