| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 17,331,159 – 17,331,275 |
| Length | 116 |
| Max. P | 0.514035 |
| Location | 17,331,159 – 17,331,275 |
|---|---|
| Length | 116 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 82.23 |
| Mean single sequence MFE | -30.62 |
| Consensus MFE | -19.07 |
| Energy contribution | -18.88 |
| Covariance contribution | -0.19 |
| Combinations/Pair | 1.23 |
| Mean z-score | -1.76 |
| Structure conservation index | 0.62 |
| SVM decision value | -0.04 |
| SVM RNA-class probability | 0.514035 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17331159 116 + 22224390 -GGGCGUGGCACUUCAGACGAUUACCGUCCAGCUCAUUUGGCAGCCAAUUAAGAGUAAAUCUAAGCUCCCAACUUCAAAGUCCACCUUCCA-UUUCCUC-CUCGAAAUUGCGAAGGCAA -((((.((((......((((.....))))..(((.....))).)))).....((((........))))...........)))).(((((((-((((...-...)))).)).)))))... ( -29.70) >DroPse_CAF1 60620 103 + 1 UAGGCGUGUCAAUUGAGUCGAUUACUGUCCGACUCAUUUGGCAGCCAAUUAGGAGGAAAUCC-----CCCAG-UU---AGUCUC-----UG-UCUCAAA-UGGACAAUCAAGAACACGA ..(((.((((((.(((((((((....)).))))))).))))))))).....((.((....))-----.)).(-((---......-----((-(((....-.)))))......))).... ( -33.50) >DroSec_CAF1 48552 118 + 1 UGGGCGUGGCACUUCAGACGAUUACCGUCCAGCUCAUUUGCCAGCCAAUUAAGAGUAAAUCUAAGCUCCCAACUUCAAAGUCCACCUUCCUCCUUCCUC-CUCGCAAUUGCGAAGGCAA (((((.((((......((((.....))))..((......))..)))).....((((........))))...........)))))..............(-(((((....))).)))... ( -27.60) >DroSim_CAF1 38341 118 + 1 UGGGCGUGGCACUUCAGACGAUUACCGUCCAGCUCAUUUGGCAGCCAAUUAAGAGUAAAUCUAAGCUCCCAACUUCAAAGUCCACCUUCCACCUUCCUC-CGCGCAAUUGCGAAGGCAA (((((.((((......((((.....))))..(((.....))).)))).....((((........))))...........)))))...........(((.-((((....)))).)))... ( -28.50) >DroEre_CAF1 48921 117 + 1 -GGGCGUGGCACUUCAGACGAUUACCGUCCAGCUCAUUUGGCAGCCAAUUAAGAGUAAAUCUAAGCUCCCAAGUUCAAAGCCCACCUUUCCACUUCCUC-UGCGGAAUUGCGAAGGCAA -((((.((((......((((.....))))..(((.....))).)))).....((((........))))...........)))).(((((.((.((((..-...)))).)).)))))... ( -34.40) >DroYak_CAF1 39528 119 + 1 UGGGCGUGGCACUUCAGACGAUUACCGUCCAGCUCAUUUGGCAGCCAAUUAAGAGUAAAUCUAAGCACCCAACUUCAAAGCCCACCUCUCCACUUCCCCAUUCGGAAUUGCGAAGGCAA (((((.((((......((((.....))))..(((.....))).))))....(((.....))).................)))))(((.((((.((((......)))).)).)))))... ( -30.00) >consensus UGGGCGUGGCACUUCAGACGAUUACCGUCCAGCUCAUUUGGCAGCCAAUUAAGAGUAAAUCUAAGCUCCCAACUUCAAAGUCCACCUUCCA_CUUCCUC_CGCGCAAUUGCGAAGGCAA .((((.((((......((((.....))))..(((.....))).))))....(((.....))).................))))........................((((....)))) (-19.07 = -18.88 + -0.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:03 2006