Locus 6923

Sequence ID X_DroMel_CAF1
Location 17,321,680 – 17,321,775
Length 95
Max. P 0.822043
window11322

overview

Window 2

Location 17,321,680 – 17,321,775
Length 95
Sequences 4
Columns 95
Reading direction reverse
Mean pairwise identity 90.07
Mean single sequence MFE -16.61
Consensus MFE -12.12
Energy contribution -13.87
Covariance contribution 1.75
Combinations/Pair 1.00
Mean z-score -2.39
Structure conservation index 0.73
SVM decision value 0.68
SVM RNA-class probability 0.822043
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17321680 95 - 22224390
AAAUGGAAAAUGGAAAAGGUUCAAAAAACAAAAUUCCAAUUUGCAAUAGUCCACUAAUUGGGCUGUAAAAAAAUAAGGAAAAGGUUGACUUGACA
...((.(((.(((((...(((.....)))....))))).))).))((((((((.....))))))))..........(...(((.....)))..). ( -17.80)
>DroSec_CAF1 38732 93 - 1
AAAUGGAAAAUGGAAAAGGUUCAAAAAACAAAAUUCCAAUUUGCAAUAGUCCACUAAUUGGGCUGUAAA-AAAUAAGGAAAAGGU-GCUUUGACA
...((.(((.(((((...(((.....)))....))))).))).))((((((((.....))))))))...-......(..((((..-.))))..). ( -17.90)
>DroSim_CAF1 28621 93 - 1
AAAUGGAAAAUGGAAAAGGUUCAAAAAACAAAAUUCCAAUUUGCAAUAGUCCACUAAUUGGGCUGUAAA-AAAUAAGGAAAAGGU-GCUUUGACA
...((.(((.(((((...(((.....)))....))))).))).))((((((((.....))))))))...-......(..((((..-.))))..). ( -17.90)
>DroYak_CAF1 29747 86 - 1
AAA-------UGGAAAAGGUUCAAAACACAAAAUACCAAUUUGCAAUAGUCCACUAAUUGGGCUGUAUG-AAAUAAGGAAAAAGC-GUUUCGACA
...-------..((((.(((..............))).((((.((((((((((.....)))))))).))-))))...........-.)))).... ( -12.84)
>consensus
AAAUGGAAAAUGGAAAAGGUUCAAAAAACAAAAUUCCAAUUUGCAAUAGUCCACUAAUUGGGCUGUAAA_AAAUAAGGAAAAGGU_GCUUUGACA
...((.(((.(((((...(((.....)))....))))).))).))((((((((.....))))))))............................. (-12.12 = -13.87 +   1.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:02 2006