Locus 6922

Sequence ID X_DroMel_CAF1
Location 17,321,513 – 17,321,657
Length 144
Max. P 0.823717
window11320 window11321

overview

Window 0

Location 17,321,513 – 17,321,621
Length 108
Sequences 3
Columns 108
Reading direction reverse
Mean pairwise identity 84.92
Mean single sequence MFE -13.65
Consensus MFE -11.22
Energy contribution -11.00
Covariance contribution -0.22
Combinations/Pair 1.07
Mean z-score -1.50
Structure conservation index 0.82
SVM decision value -0.06
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17321513 108 - 22224390
AUCAUAACAAAUCCUCUGUUUCAUUAGGAUUUGUUUCACGUUUCGAUUUUUUUUUGUUUCUCAUUUUCAUACAUGAAGCAUGUUUCACUCACUGGCUGGCCUUUGGUU
.....((((((((((..........))))))))))...................((((((..............))))))........(((..((....))..))).. ( -16.14)
>DroSec_CAF1 38581 89 - 1
AUCAUAACAAAUCCUCUGUUUCAUUAGGGUUUGUUUCACAUUUCGAUUUUU------UUCUUAUUUUCAUACAUGAAGCAUGUUUCAC-------------UUUGCUU
.((((((((((((((..........)))))))))).........((.....------.))............))))((((........-------------..)))). ( -12.40)
>DroSim_CAF1 28473 89 - 1
AUCAUAACAAAUCCUCUGUUUCAUUAGGGUUUGUUUCACAUUUCGAUUUUU------UUCUUAUUUUCAUACAUGAAGCAUGUUUCAC-------------UUUGCUU
.((((((((((((((..........)))))))))).........((.....------.))............))))((((........-------------..)))). ( -12.40)
>consensus
AUCAUAACAAAUCCUCUGUUUCAUUAGGGUUUGUUUCACAUUUCGAUUUUU______UUCUUAUUUUCAUACAUGAAGCAUGUUUCAC_____________UUUGCUU
.....((((((((((..........))))))))))......................................(((((....)))))..................... (-11.22 = -11.00 +  -0.22)

alignment

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secondary structure

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dotplot

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Window 1

Location 17,321,541 – 17,321,657
Length 116
Sequences 3
Columns 119
Reading direction reverse
Mean pairwise identity 90.52
Mean single sequence MFE -20.70
Consensus MFE -16.69
Energy contribution -16.80
Covariance contribution 0.11
Combinations/Pair 1.04
Mean z-score -2.63
Structure conservation index 0.81
SVM decision value 0.69
SVM RNA-class probability 0.823717
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17321541 116 - 22224390
G---CUUUUCAUGAAACCACAACAAAUGUGCAACUAAAAAUCAUAACAAAUCCUCUGUUUCAUUAGGAUUUGUUUCACGUUUCGAUUUUUUUUUGUUUCUCAUUUUCAUACAUGAAGCA
(---((((..((((((.((((.....))))(((..(((((((..((((((((((..........)))))))))).........)))))))..)))........))))))....))))). ( -23.60)
>DroSec_CAF1 38596 113 - 1
GGUGCUUUUCAUGAAACCACAUCAAAUGUCCACCUUAAAAUCAUAACAAAUCCUCUGUUUCAUUAGGGUUUGUUUCACAUUUCGAUUUUU------UUCUUAUUUUCAUACAUGAAGCA
..((((((..((((((.......((((((...............((((((((((..........))))))))))..)))))).((.....------.))....))))))....)))))) ( -17.53)
>DroSim_CAF1 28488 110 - 1
G---CUUUUCAUGAAACCACAGCAAAUGUGCACCUUAAAAUCAUAACAAAUCCUCUGUUUCAUUAGGGUUUGUUUCACAUUUCGAUUUUU------UUCUUAUUUUCAUACAUGAAGCA
(---((((..((((((.....(.(((((((..............((((((((((..........)))))))))).))))))))((.....------.))....))))))....))))). ( -20.96)
>consensus
G___CUUUUCAUGAAACCACAACAAAUGUGCACCUUAAAAUCAUAACAAAUCCUCUGUUUCAUUAGGGUUUGUUUCACAUUUCGAUUUUU______UUCUUAUUUUCAUACAUGAAGCA
......(((((((....((((.....))))......((((((..((((((((((..........)))))))))).........)))))).....................))))))).. (-16.69 = -16.80 +   0.11)

alignment

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secondary structure

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dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:26:01 2006