Locus 6921

Sequence ID X_DroMel_CAF1
Location 17,319,520 – 17,319,620
Length 100
Max. P 0.996632
window11319

overview

Window 9

Location 17,319,520 – 17,319,620
Length 100
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 89.45
Mean single sequence MFE -31.72
Consensus MFE -29.78
Energy contribution -29.06
Covariance contribution -0.72
Combinations/Pair 1.21
Mean z-score -2.00
Structure conservation index 0.94
SVM decision value 2.72
SVM RNA-class probability 0.996632
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17319520 100 + 22224390
AUUCGAUGGAACUCAUACGGAUUCUUCGGAAAUCCGUCGUUCAAUCGGCUGGGCCGGGAAUCCGCGGAUUUCGCGAUUUCGUCAAUGAAUAAACACAUAU--
....(((((((.((....(((((((.(((...((.((((......)))).)).))))))))))(((.....)))))))))))).................-- ( -31.40)
>DroSec_CAF1 36623 100 + 1
AUUCGGCGGAACUCAUUUGGAUUCUUCGGAAAUCCGUCGUUCAAUCGGCUGGAGCGAGAAUCCGCGGAUUUCGCGAUUUCGUCAAUGAAUAUACACAUAU--
....(((((((.((....(((((((.((....(((((((......)))).))).)))))))))(((.....)))))))))))).................-- ( -31.40)
>DroSim_CAF1 26502 100 + 1
AUUCGACGGAACUCAUUUGGAUUCUUCGGAAAUCCGUCGUUCAAUCGGCUGGGGCGAGAAUCCGCGGAUUUCGCGAUUUCGUCAAUGAAUAUACACAUAU--
....(((((((((((...((((((....).)))))((((......))))))))((((((.((....))))))))..))))))).................-- ( -31.50)
>DroEre_CAF1 37514 102 + 1
UUUCGACGGAACUCAUUCGGAUUCUUCGGAAAUCCGUCGUUCAAUCGGCUGGAGGGGGAAUCCGCGGAUAUCGCGAUUUCGUCAAUGAAUAUACGUAUAUAU
....(((((((.((....(((((((((.....(((((((......)))).))).)))))))))(((.....))))))))))))................... ( -32.60)
>DroYak_CAF1 27617 102 + 1
GUUCGACGGAACUCAUUCGGAUUCUUCGGAAAUCCGUCGCUCAAUCGACUGGAGCGGGAAUCCGUGGAUUUCGCGAAUUCGUCAAUGAAGGAAUACACAUAU
(((((.(((((..((..((((((((.(((....))).(((((.........)))))))))))))))..))))))))))........................ ( -31.70)
>consensus
AUUCGACGGAACUCAUUCGGAUUCUUCGGAAAUCCGUCGUUCAAUCGGCUGGAGCGGGAAUCCGCGGAUUUCGCGAUUUCGUCAAUGAAUAUACACAUAU__
....(((((((.((....(((((((.((....(((((((......)))).))).)))))))))(((.....))))))))))))................... (-29.78 = -29.06 +  -0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:59 2006