Locus 6919

Sequence ID X_DroMel_CAF1
Location 17,314,665 – 17,314,778
Length 113
Max. P 0.785455
window11315

overview

Window 5

Location 17,314,665 – 17,314,778
Length 113
Sequences 5
Columns 113
Reading direction reverse
Mean pairwise identity 91.68
Mean single sequence MFE -25.88
Consensus MFE -22.62
Energy contribution -22.38
Covariance contribution -0.24
Combinations/Pair 1.10
Mean z-score -1.38
Structure conservation index 0.87
SVM decision value 0.57
SVM RNA-class probability 0.785455
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17314665 113 - 22224390
CAAGUGAAUUCCAGUCACGUGCCUAGAAUAAUCGCAUUCUACAUGAGGCUCUCAUAAUUUUCUCUCAGUACUUAAUUGAGCUCGUGACCCGAGCUUCAGUUUGCCAUGGAAUC
.......((((((((((((.((.((((((......)))))).(((((...))))).........(((((.....))))))).)))))).(((((....)))))...)))))). ( -27.40)
>DroSec_CAF1 31844 113 - 1
CAACUGAAUUCCAGUCACGUGCCUAGAAUAAUCGCAUUCUACAUGAGGCUCUCAUAAUUUUCUCUCAGUACAUAAUUGAGCUCGUGACCCGAGCUUCAGUUUGCCAUGGAAUC
.((((((((((..((((((.((.((((((......)))))).(((((...))))).........(((((.....))))))).))))))..))).)))))))............ ( -27.80)
>DroSim_CAF1 21303 113 - 1
CAACUGAAUUCCAGUCACGUGCCUAGAAUAAUCGCAUUUUACAUGAGGCUUUCAUAAUUUUUUCUCAGUACUUAAUUGAGCUCGUGACCCGAGCUUCAGUUUGCCAUGGAAUU
......(((((((((((((.((((....(((.......)))....))))..............((((((.....))))))..)))))).(((((....)))))...))))))) ( -26.40)
>DroEre_CAF1 32984 113 - 1
CAACUGAAUUCUAGUCACGUGCGUAGAACAAUCGCAGUAUACACGAGGCUUUCAUAAUUUUCUCCCAGUACUUAAUUGAGCUCGUGACCCAAGCCUCAGUUUGCCAUGGAAUC
.......((((((((((((.((......((((...(((((....((((............))))...)))))..)))).)).)))))).(((((....)))))...)))))). ( -21.50)
>DroYak_CAF1 22694 108 - 1
-----GAAUUCCAGUCACGUGCGUAAAACAAUCGCAUUCUACAUGAGGCUUUCAUAAUUUUCUCUCAGUACUUAAUUGAGCUCGUGACCCAAGCUUCAGUUUGCUAUGGAAUC
-----..((((((((((((.((...........((.(((.....)))))...............(((((.....))))))).)))))).(((((....)))))...)))))). ( -26.30)
>consensus
CAACUGAAUUCCAGUCACGUGCCUAGAAUAAUCGCAUUCUACAUGAGGCUUUCAUAAUUUUCUCUCAGUACUUAAUUGAGCUCGUGACCCGAGCUUCAGUUUGCCAUGGAAUC
.......((((((((((((.((....................(((((...))))).........(((((.....))))))).)))))).(((((....)))))...)))))). (-22.62 = -22.38 +  -0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:56 2006