Locus 6918

Sequence ID X_DroMel_CAF1
Location 17,312,819 – 17,312,917
Length 98
Max. P 0.564178
window11314

overview

Window 4

Location 17,312,819 – 17,312,917
Length 98
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 91.27
Mean single sequence MFE -21.92
Consensus MFE -16.68
Energy contribution -16.28
Covariance contribution -0.40
Combinations/Pair 1.24
Mean z-score -1.58
Structure conservation index 0.76
SVM decision value 0.06
SVM RNA-class probability 0.564178
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17312819 98 + 22224390
GUAGCGCUG-------GGUACAAUAAAUAGAAUAACAGAUUUCUAGUAGCUAGUAAACCUUUAUUAAUGGCCUCAUGGGAAUUGGGUCAAUUGAAAAUGUUUGAA
.....((((-------(.(((......(((((........)))))))).)))))((((.(((.((((((((((.((....)).))))).)))))))).))))... ( -19.40)
>DroSec_CAF1 30087 98 + 1
GUAGCGCUG-------GGUACAAUAAACAGAAUAACAGAUUUCUAGUAGCUAGUAAACAUUUAUCAAUGGCCCCAUGGGAAAUGGGUCAAUUGAAAAUGUUUGAA
.((((((((-------((.......................)))))).)))).(((((((((.((((((((((.((.....))))))).)))))))))))))).. ( -26.00)
>DroSim_CAF1 19522 98 + 1
GUAGCGCUG-------GGUACAAUAAACAGAAUAACAGAUUUCUAGUAGCUAGUAAACAUUUAUUAAUGGCCCCAUGGGAAAUGGGUCAAUUGAAAAUGUUUGAA
.((((((((-------((.......................)))))).)))).(((((((((.((((((((((.((.....))))))).)))))))))))))).. ( -23.80)
>DroEre_CAF1 31297 98 + 1
GUGGCGCUG-------AGUACAAUAAACAGAAUAGCAGAUUUCUAGUAGCUGGUAAACAUUCAUUAAUGGCUUCAUGGGAAAUGGGUCAAUUGAAAAUGUUUGAA
.....((((-------.((.......))((((........))))..))))...((((((((..(((((((((.(((.....))))))).))))).)))))))).. ( -15.40)
>DroYak_CAF1 20794 105 + 1
GUAGCGCUGGUAACUGGAUACAAUAAACAGAAUAACAGAUUUCUAGUAGCCAGUAAACAUUUAUUAAUGGCUUCAUGGGAAAUAGGUCAAUUGAAAAUGUUUGAA
.....((((((.((((((.......................)))))).))))))((((((((.((((((((((.((.....))))))).)))))))))))))... ( -25.00)
>consensus
GUAGCGCUG_______GGUACAAUAAACAGAAUAACAGAUUUCUAGUAGCUAGUAAACAUUUAUUAAUGGCCUCAUGGGAAAUGGGUCAAUUGAAAAUGUUUGAA
.(((((((........))).......((((((........)))).)).)))).(((((((((.((((((((((.((.....))))))).)))))))))))))).. (-16.68 = -16.28 +  -0.40)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:55 2006