Locus 6917

Sequence ID X_DroMel_CAF1
Location 17,310,859 – 17,310,966
Length 107
Max. P 0.569726
window11313

overview

Window 3

Location 17,310,859 – 17,310,966
Length 107
Sequences 4
Columns 109
Reading direction forward
Mean pairwise identity 90.28
Mean single sequence MFE -25.02
Consensus MFE -21.25
Energy contribution -20.75
Covariance contribution -0.50
Combinations/Pair 1.24
Mean z-score -1.41
Structure conservation index 0.85
SVM decision value 0.07
SVM RNA-class probability 0.569726
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17310859 107 + 22224390
UUAAAACCAUCC--GAACCAUCUGAACCAUUUGAACCACCUCCAUCUGCAACUGCUGUCAACGUCAAAGUCUCUUGAGAGAUUUUAAGGGCGAAAUUCGGACGGUUUAG
...(((((.(((--(((..............................((....))......((((((((((((....))))))))...))))...)))))).))))).. ( -25.70)
>DroSec_CAF1 28182 109 + 1
UGAAAACCACCUUAAAACCAUCCGAACCAUCUGAACCACCUCCAUCUGCAACUGCUGUCAACCUCAAAGUCUCUUGAGAGAUUUUAAGGGCGAAAUUCGGACGGUUUAG
..............(((((.((((((.....................((....))..((..(((.((((((((....)))))))).)))..))..)))))).))))).. ( -27.90)
>DroEre_CAF1 29324 107 + 1
UUAAAACCAUCC--GAACCAUUUGAACCAUCUGAAACACCUCCGUCUGCAACUGCUGUCAACGUCAAAGUAUCUUAAGAGAUUUUAAGGGCGAAAAUCAGGCGGUUUAG
............--........((((((..((((.........(.(.((....)).).)..((((.....((((....))))......))))....))))..)))))). ( -20.80)
>DroYak_CAF1 18798 107 + 1
UUAAAACCAUCC--AAGCCAUCUGAACGAUCUGAACCACCUCCGUUUGCAACUGCUGUCAACGUCAAAGUCUCUUGAGAGAUUUUAAGGGCGAAAUUCAGACGGUUUAG
............--(((((.((((((((..((..........((((.(((.....))).))))..((((((((....)))))))).))..))...)))))).))))).. ( -25.70)
>consensus
UUAAAACCAUCC__AAACCAUCUGAACCAUCUGAACCACCUCCAUCUGCAACUGCUGUCAACGUCAAAGUCUCUUGAGAGAUUUUAAGGGCGAAAUUCAGACGGUUUAG
..............(((((.((((((.....................((....))......((((((((((((....))))))))...))))...)))))).))))).. (-21.25 = -20.75 +  -0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:54 2006