| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 17,305,357 – 17,305,454 |
| Length | 97 |
| Max. P | 0.500000 |
| Location | 17,305,357 – 17,305,454 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 87.77 |
| Mean single sequence MFE | -43.67 |
| Consensus MFE | -29.31 |
| Energy contribution | -30.31 |
| Covariance contribution | 1.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.27 |
| Structure conservation index | 0.67 |
| SVM decision value | -0.07 |
| SVM RNA-class probability | 0.500000 |
| Prediction | OTHER |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17305357 97 + 22224390 GCCUACCGAUGUCCAAGAAGGCGCG--------GAGGU------AGGGAAUUCAGUACGGAAAAGCCAGAAGAAAACUCUGGCUGCCGCUCCCUCUCGCUUUGCCACAUGG ((((.(((.((((......))))))--------)))))------(((((........(((...(((((((.......))))))).))).)))))................. ( -31.40) >DroSec_CAF1 22821 105 + 1 GCCUACCGAUGUCCAAGAAGGCGGGGUUUGGUGGGGGG------AGGGUAUUCAGUGCGGAAAAGCCAGAAGAAAACUCUGGCUGCCGCUCCCUCUCGCUUUGCCACAUGG .((((((((..(((........)))..))))))))(((------((((........((((...(((((((.......))))))).)))).))))))).............. ( -45.10) >DroSim_CAF1 12774 111 + 1 GCCUACCGAUGUCCACGAAGGCGGGGUUUGGUGGGGGGAGGGGGAGGGAAUUCAGUGCGGAAAAGCCAGAAGAAAACUCUGGCUGCCGCUCCCUCUCGCUUUGCCACAUGG .((((((((..(((.(....).)))..))))))))(((((.((((((((.......((((...(((((((.......))))))).)))))))))))).)))..))...... ( -54.51) >consensus GCCUACCGAUGUCCAAGAAGGCGGGGUUUGGUGGGGGG______AGGGAAUUCAGUGCGGAAAAGCCAGAAGAAAACUCUGGCUGCCGCUCCCUCUCGCUUUGCCACAUGG .....((.((((.....((((((((...................(((((.......((((...(((((((.......))))))).)))))))))))))))))...)))))) (-29.31 = -30.31 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:51 2006