Locus 6914

Sequence ID X_DroMel_CAF1
Location 17,302,471 – 17,302,573
Length 102
Max. P 0.546513
window11309

overview

Window 9

Location 17,302,471 – 17,302,573
Length 102
Sequences 5
Columns 102
Reading direction forward
Mean pairwise identity 82.35
Mean single sequence MFE -23.82
Consensus MFE -14.44
Energy contribution -14.40
Covariance contribution -0.04
Combinations/Pair 1.33
Mean z-score -1.82
Structure conservation index 0.61
SVM decision value 0.03
SVM RNA-class probability 0.546513
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17302471 102 + 22224390
GCACCUCGCAAGGUCACACUGUGACUGUGGUGUGCCCAGCUAUUAAUAAGAAGCAAAUAAAUUGAGGUUUCUAGUAACCCUCCAAAUUAAUAUAUCAAUUUA
((((.(((((..(((((...)))))))))).))))...(((..........)))...((((((((((((......))))...............)))))))) ( -21.56)
>DroSec_CAF1 19750 102 + 1
GCACCUCGCAUGGUCCCACUGCCACUGUGGUGUGCCCAGCCAUUAAUAAGAUGCAAAUAAAUUGGGGUUUCUAGUAACCCUCGAAAUUAAUAUUUCAAUUUA
((((.(((((((((......)))).))))).))))...((.(((.....)))))...((((((((((((......)))))).(((((....))))))))))) ( -25.90)
>DroSim_CAF1 9703 102 + 1
GUACCUCGCAUGGUCACACUGCCACUGUGGUGUGCCCAGCCAUUAAUAAGAAGCAAAUAAAUUGGGGUUUCUAGUAACCAUUGAAAUUAAUAUUUCAAUUUA
.(((...((.(((.(((((..(....)..))))).)))))........((((((............)))))).)))...((((((((....))))))))... ( -24.60)
>DroEre_CAF1 20057 102 + 1
GCGUCUCGCAAGGUCACACUGCGAUUGUAGUGUGCCCAUCUAGUAAUAUGAGGCAAAUAAAUGAACGUUUCAAGUAACCCUUCAAAAUAUUACUUCAAUUUA
(((...)))..((.((((((((....)))))))).))....((((((((((((....((..(((.....)))..))...)))))...)))))))........ ( -23.60)
>DroYak_CAF1 10225 102 + 1
GCAGAAUGCAAGGUCACACUGCGCAAGUGGUGUGCCCAGCUAAUCAUAAGAGGCAAAUAAAUUAGUUUUCUAAGUAACCCGUCAAAUUAAUAUUUCAAUUAA
...(((.((..((.(((((..(....)..)))))))..))...........(((.......((((....)))).......)))..........)))...... ( -23.44)
>consensus
GCACCUCGCAAGGUCACACUGCGACUGUGGUGUGCCCAGCUAUUAAUAAGAAGCAAAUAAAUUGGGGUUUCUAGUAACCCUUCAAAUUAAUAUUUCAAUUUA
((.....))..((.((((((((....)))))))).))...........((((((............)))))).............................. (-14.44 = -14.40 +  -0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:50 2006