Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 17,298,039 – 17,298,133 |
Length | 94 |
Max. P | 0.983732 |
Location | 17,298,039 – 17,298,133 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 73.19 |
Mean single sequence MFE | -43.94 |
Consensus MFE | -21.40 |
Energy contribution | -21.65 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.25 |
Mean z-score | -2.37 |
Structure conservation index | 0.49 |
SVM decision value | 1.95 |
SVM RNA-class probability | 0.983732 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17298039 94 - 22224390 GGAGGAGGAGCAGGUGUUGGUAGUUCCCAGAGAGAGGAGGCCACCACACCGGGUGAAUCGCCCGGAGGACGCCUGUCCCGCUGGUUUUCCAUCA ((((((((..(((((((((((.((..((.......))..)).)))...(((((((...)))))))..))))))))..)).....)))))).... ( -42.10) >DroVir_CAF1 12099 82 - 1 UCAGGGGCAUC------------GUCUCAGCGCGAGGAGAACACUGCACCCGGUGAAUCGCCGGGCGGACGUCUUUCGCGUUGGUUCUCCAUUC ...((((....------------..(.(((((((((.(((...((((..((((((...))))))))))...)))))))))))))..)))).... ( -32.80) >DroGri_CAF1 9271 85 - 1 UCGGGGGGGGCAU-C--------GGGGCAGCGCGAGGAUAUUACAACGCCGGGUGAAUCGCCGGGCGGACGUUUGUCGCGCUGGUUCUCGAUAC ...........((-(--------((((((((((((.((........((((.((((...)))).)))).....)).))))))))..))))))).. ( -36.92) >DroSec_CAF1 15281 94 - 1 GGGGGAGGAGCAGGUGGUGGUGGUUCCCAGAGAGAGGAGGCCACCACACCGGGUGAAUCGCCCGGAGGACGUCUGUCCCGCUGGUUCUCCAUCA (..((((((.(((.((((((((((..((.......))..)))))))).(((((((...))))))).((((....))))))))).))))))..). ( -50.60) >DroSim_CAF1 6498 94 - 1 GGUGGAGGAGCAGGUGGUGGUGGUUCCCAGAGAGAGGAGGCCACCACACCGGGUGAAUCGCCCGGAGGACGUCUGUCCCGCUGGUUCUCCAUCA (((((((((.(((.((((((((((..((.......))..)))))))).(((((((...))))))).((((....))))))))).))))))))). ( -55.00) >DroMoj_CAF1 22892 91 - 1 UCGGGGGCGGCAGGCG---GGGUGUCCCAGCGCGAGGAUAAUACGGCGCCCGGCGAAUCGCCGGGCGGACGGCUGUCGCGCUGGUUCUCCAUAC ..(((((.((((....---...))))(((((((((.(......((.(((((((((...)))))))))..))..).))))))))).))))).... ( -46.20) >consensus GCGGGAGGAGCAGGUG___GUGGGUCCCAGAGAGAGGAGACCACCACACCGGGUGAAUCGCCCGGAGGACGUCUGUCCCGCUGGUUCUCCAUCA ...((((((.(((.................................(.(((((((...))))))).)(((....)))...))).)))))).... (-21.40 = -21.65 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:48 2006