Locus 6911

Sequence ID X_DroMel_CAF1
Location 17,297,807 – 17,297,905
Length 98
Max. P 0.587023
window11305

overview

Window 5

Location 17,297,807 – 17,297,905
Length 98
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 75.48
Mean single sequence MFE -33.51
Consensus MFE -23.63
Energy contribution -23.72
Covariance contribution 0.09
Combinations/Pair 1.33
Mean z-score -0.94
Structure conservation index 0.71
SVM decision value 0.11
SVM RNA-class probability 0.587023
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17297807 98 + 22224390
CUCACCUCUGGCACUCCGGGCAUCAUUUUGCUGGCUCCCAAAUUGGCCAAUUUCUGUGGUGAAGCUGCGUCCAGCGCUACUCCUUGGG---AUCCUGCUCC-------
.........((((.....((((......))))((.((((((.((.((((.......)))).))((((....))))........)))))---).))))))..------- ( -26.80)
>DroVir_CAF1 11900 83 + 1
CUUACCUCAGGCACGCCUGGCAUCAUUUUGCUGGCGCCCAGAUUGGCCAGCUUCUGUGGCGAGGCGGCGUCCAGCGUCGCUG------------------U-------
.....(((......(((.((((......)))))))(((((((..((....)))))).))))))((((((.....))))))..------------------.------- ( -33.00)
>DroGri_CAF1 9048 86 + 1
CAUACCUCGGGCACACCGGGCAUCAUUUUGCUGGCGCCCAAAUUGGCCAGCUUCUGUGGCGAGGCGGCGUCCAGCGUCGCUG---------------AUAU-------
.....(((((.....))))).((((...((((((((((....((.((((.(....))))).))..)))).))))))....))---------------))..------- ( -33.10)
>DroYak_CAF1 5723 101 + 1
CUCACCUCUGGCACUCCGGGCAUCAUUUUGCUGGCUCCCAAAUUGGCCAAUUUCUGUGGCGAAGCUGCGUCCAGCGCUACUCCCUGGGAUGAUCCUGCUCC-------
.........((((..(((((........((((((..(.((..((.((((.......)))).))..)).).))))))......)))))..))..))......------- ( -26.54)
>DroMoj_CAF1 22687 83 + 1
CUUACCUCGGGCACGCCCGGCAUCAUCUUGCUGGCGCCCAAAUUGGCCAGCUUCUGUGGCGAGGCGGCGUCCAGCGUCGCGU------------------U-------
.....(((((((..(((.((((......)))))))))))......((((.(....))))))))((((((.....))))))..------------------.------- ( -36.10)
>DroAna_CAF1 15946 102 + 1
CUCACCUCUGGCACGCCGGGCAUCAUCUUGCUGGCCCCCAGAUUGGCCAGCUUCUGGGGCGAGGCGGCGUCCUGCGCUGCUCCUCC------UCCUGCUCCUGCCGAG
.....(((.((((....(((((.......(((((((........)))))))....((((.(..((((((.....))))))..).))------)).))))).))))))) ( -45.50)
>consensus
CUCACCUCUGGCACGCCGGGCAUCAUUUUGCUGGCGCCCAAAUUGGCCAGCUUCUGUGGCGAGGCGGCGUCCAGCGCCGCUC_______________CUCC_______
.......((((....))))((..((....((((((..........))))))...))..))..(((((((.....)))))))........................... (-23.63 = -23.72 +   0.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:47 2006