Locus 6907

Sequence ID X_DroMel_CAF1
Location 17,286,727 – 17,286,833
Length 106
Max. P 0.965847
window11295

overview

Window 5

Location 17,286,727 – 17,286,833
Length 106
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 83.82
Mean single sequence MFE -33.30
Consensus MFE -29.86
Energy contribution -28.77
Covariance contribution -1.09
Combinations/Pair 1.30
Mean z-score -2.20
Structure conservation index 0.90
SVM decision value 1.59
SVM RNA-class probability 0.965847
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17286727 106 + 22224390
UUAAAUUGUCGCUCGUUGCGGCUGUUUGCUGUUUUUGCGGGCAAACCAUUUGUACACUACUCGAAAAAGGGUAGCACAGUCCAGUGAAUAGCUUUGUACAUUCCGA--------------
..........((((((.(((((.....)))))....))))))........((((((((((((......))))))(((......)))........))))))......-------------- ( -30.80)
>DroSim_CAF1 5667 106 + 1
UUAAAUUGUCGCUCGUUGCGGCCGUUUGCUGUUUUUGCGGGCAAACCAUUUGUACACUACCCGAAAAAGGGUAGUGCAAUCCAGUGAAUAGCUUUGUAUAUUCCGA--------------
.......(((((.....))))).(((..(((...((((((.....))........(((((((......)))))))))))..)))..))).................-------------- ( -32.90)
>DroYak_CAF1 6989 120 + 1
UUAAAUUGUCGCUCGUUGCGGCUGUUUGCUGUUUUUGCGGGCAAACCAUUUGUACACUACCCGAAAAAGGGUAGCGUGAACUAGUGGAUAGUCUUGUAUAUUCAGAAAAUAACCAAAAUA
.......(((((.....)))))(((((.(((..(.(((((((...(((((..(((.((((((......)))))).)))....)))))...))).)))).)..))).)))))......... ( -36.20)
>consensus
UUAAAUUGUCGCUCGUUGCGGCUGUUUGCUGUUUUUGCGGGCAAACCAUUUGUACACUACCCGAAAAAGGGUAGCGCAAUCCAGUGAAUAGCUUUGUAUAUUCCGA______________
.........(((.....)))((((((..(((...(((((.((((.....))))...((((((......)))))))))))..)))..))))))............................ (-29.86 = -28.77 +  -1.09)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:38 2006