| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 17,280,576 – 17,280,696 |
| Length | 120 |
| Max. P | 0.615561 |
| Location | 17,280,576 – 17,280,696 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 81.22 |
| Mean single sequence MFE | -41.65 |
| Consensus MFE | -31.47 |
| Energy contribution | -31.08 |
| Covariance contribution | -0.39 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.32 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.17 |
| SVM RNA-class probability | 0.615561 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17280576 120 - 22224390 UUCGAGAGGCUAAAGGAAUCGCUGGCGAAGGCGAGUCAGUUGGCCAGCGAACUGCAGGCGCCCAAGCUGGUGGCCUAUAUAGCCAUCUGCAUCAACGUUAAUAACUACGAUCUGGCAUUA ....((((((((.(((...(((..((...((((..((((((.(....).))))).)..))))...))..))).)))...))))).)))((.....(((........))).....)).... ( -40.10) >DroPse_CAF1 8467 120 - 1 UUCGAGCGCCUCAAGGAGUCCCUGGCGAAGGCCAGUCAGCUGGCCAAGGAACUAAAGUCCACCAAGCUGAUGGCCUACCUGGCCAUCUGCAACACAAUCAACGAAAACGACCUGAACCUG ((((..((((...(((....)))))))..((((((....))))))..(((.(....)))).....((.(((((((.....))))))).))...........))))............... ( -41.90) >DroSec_CAF1 106 120 - 1 UUCGAGAGGCUGAAGGAAUCGCUGGCGAAGGCCAGUCAGUUGGCCAGCGAACUGCAGGCGCCCAAGCUGGUGGCCUAUAUAGCCAUCUGCACCAACGUGAAUAACUACGAUCUGGCAUUU ((((...(((..(..(....((((((....)))))))..)..)))..))))........(((...((.((((((.......)))))).)).....((((......))))....))).... ( -41.60) >DroEre_CAF1 106 120 - 1 UUCGAGAGGCUGAAGGAGUCGCUGGCGCGGGCGAGUCAGUUGGCCAGCGAACUGAAGGCGCCGCAGCUGGUGGCCUACAUAGGCAUCUGCAUCAACGUGAACAACUACGACCUGGCAUUU ....(((.(((...((.(((((..((((((.((..((((((.(....).))))))...)))))).))..))))))).....))).)))((.....((((......)))).....)).... ( -43.80) >DroYak_CAF1 106 120 - 1 UUCGAGCGGCUGAAGGAGUCGCUGGCGAGGGCGAGCCAGCUGGCCAGCGAGCUGAAGGCGCCCAAACUGGUGGCCUAUAUUGCCAUCUGCAUCAAUGUGAACGACUACGAUCUGGCAUUC .((((((((((.....)))))))..)))(((((...(((((.(....).)))))....))))).....((((((.......))))))(((.....((((......)))).....)))... ( -42.40) >DroPer_CAF1 3763 120 - 1 UUCGAGCGCCUCAAGGAGUCCCUGGCGAAGGCCAGUCAGCUGGCCAAGGAACUAAAGUCCACCAAGCUGAUGGCCUACCUGGCCAUUUGCAACACAAUCAACGAAAACGACCUGAACCUG ((((..((((...(((....)))))))..((((((....))))))..(((.(....)))).....((.(((((((.....))))))).))...........))))............... ( -40.10) >consensus UUCGAGAGGCUGAAGGAGUCGCUGGCGAAGGCCAGUCAGCUGGCCAGCGAACUGAAGGCGCCCAAGCUGGUGGCCUACAUAGCCAUCUGCAUCAACGUGAACAACUACGACCUGGCAUUG .(((...(.((..((...((((((((...(((......))).)))))))).))..)).)......((.((((((.......)))))).)).................))).......... (-31.47 = -31.08 + -0.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:35 2006