| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 17,275,636 – 17,275,744 |
| Length | 108 |
| Max. P | 0.598395 |
| Location | 17,275,636 – 17,275,744 |
|---|---|
| Length | 108 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 80.46 |
| Mean single sequence MFE | -17.73 |
| Consensus MFE | -15.04 |
| Energy contribution | -15.93 |
| Covariance contribution | 0.89 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.12 |
| Structure conservation index | 0.85 |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.598395 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17275636 108 - 22224390 CUGAGAGUGGAAUAAAUCGAGUGCUAUGCAAUCCAACUGUCAUCUGGACAGCCCUACUCUUCCUACUUGAAAA--UAUAUAU---U-UCCCU------UUUUAACAACAUUCUCUGUUGU ..((((((((........((.(((...))).))...(((((.....)))))..))))))))............--.......---.-.....------.....((((((.....)))))) ( -20.90) >DroSim_CAF1 124558 108 - 1 CUGAGAGUGGAAUAAAUCGAAUGCUAUGCAAUCCAACUGUCAUCUGGACAGCCCUACUCUUCCUACUUGAAAA--UAUAUAU---U-UCCCU------UUUUAACAACAUUCUCUGUUGU ..((((((((........((.(((...))).))...(((((.....)))))..))))))))............--.......---.-.....------.....((((((.....)))))) ( -20.90) >DroYak_CAF1 130639 119 - 1 CCGAGAGUCGAAUA-GUCGAGAGCUAUGCAAUCCAACUGUCAACUCUACACUCCUACUCUUUCCACAUAAGUAUAUUUAUAUAAAUACCCCUUUUUUUUUUAAAAAACAUUCUCUGUUUU ...(((((.((.((-((.((..((...))..))..)))))).)))))........................................................((((((.....)))))) ( -11.40) >consensus CUGAGAGUGGAAUAAAUCGAGUGCUAUGCAAUCCAACUGUCAUCUGGACAGCCCUACUCUUCCUACUUGAAAA__UAUAUAU___U_UCCCU______UUUUAACAACAUUCUCUGUUGU ..((((((((........((.(((...))).))...(((((.....)))))..))))))))..........................................((((((.....)))))) (-15.04 = -15.93 + 0.89)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:34 2006