Locus 6903

Sequence ID X_DroMel_CAF1
Location 17,273,547 – 17,273,652
Length 105
Max. P 0.870514
window11290

overview

Window 0

Location 17,273,547 – 17,273,652
Length 105
Sequences 4
Columns 105
Reading direction forward
Mean pairwise identity 85.24
Mean single sequence MFE -23.52
Consensus MFE -19.29
Energy contribution -20.73
Covariance contribution 1.44
Combinations/Pair 1.06
Mean z-score -1.91
Structure conservation index 0.82
SVM decision value 0.87
SVM RNA-class probability 0.870514
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17273547 105 + 22224390
CAGCUCCUUGUGGAGCAUAUAUAGAUAUAUAUAUGAUACUGAUACUGACGAGUGUGCCAAGUUUUCAGAAUUUUGUUUGACCAAUUAUGGAUUAGACAAAAACUU
..(((((....)))))(((((((....)))))))....((((.(((.............)))..))))..(((((((((((((....))).)))))))))).... ( -27.42)
>DroSec_CAF1 118669 105 + 1
CAGUUCCUUGUGGAGCAUAUAUAGAUAUAUGUAUAAACCUGAUACUGACGAGUGUGCCAAGUUUUCAGAAUUUUGUUUGACCAAUUAUGGAUUAGACAAAAACUU
..(((((....)))))(((((((....)))))))....((((.(((.............)))..))))..(((((((((((((....))).)))))))))).... ( -24.82)
>DroSim_CAF1 122445 105 + 1
CAGCUCCUUGUGGAGCAUAUAUAGAUAUAUGUAUAAACCUGAUACUGACGAGUGUGCCAAGUUUUCAGAAUUUUGUUUGACCAAUUAUGGAUUAGACAAAAACUA
..(((((....)))))(((((((....)))))))....((((.(((.............)))..))))..(((((((((((((....))).)))))))))).... ( -27.22)
>DroYak_CAF1 128554 90 + 1
CAGCAC----------AUAUAUA-----AUAUAUAUACCUGAUCCUGACGAGUGCGCCAAGUGUUCAGCAUUUUGUUUGACCAAAUAUGGAUUAGACCAAAACCC
......----------((((((.-----..))))))..(((((((....(((..(.....)..))).......(((((....))))).))))))).......... ( -14.60)
>consensus
CAGCUCCUUGUGGAGCAUAUAUAGAUAUAUAUAUAAACCUGAUACUGACGAGUGUGCCAAGUUUUCAGAAUUUUGUUUGACCAAUUAUGGAUUAGACAAAAACUU
..(((((....)))))(((((((....)))))))..........((((.((.(......).)).))))..(((((((((((((....))).)))))))))).... (-19.29 = -20.73 +   1.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:34 2006