Locus 6902

Sequence ID X_DroMel_CAF1
Location 17,272,906 – 17,272,998
Length 92
Max. P 0.737184
window11289

overview

Window 9

Location 17,272,906 – 17,272,998
Length 92
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 79.49
Mean single sequence MFE -30.45
Consensus MFE -16.27
Energy contribution -17.80
Covariance contribution 1.53
Combinations/Pair 1.21
Mean z-score -2.13
Structure conservation index 0.53
SVM decision value 0.44
SVM RNA-class probability 0.737184
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17272906 92 - 22224390
UCGAAAAUGUCCUUGCACACGCCUCUGAAAGUUCCACAUUAAGAACGGGAUAAUGG---GGGUAU-GAGUCG--UGCAUUCGGAGGCAUCUGUGCAGA
............(((((((.(((((((((...(((.(((((.........))))))---))((((-(...))--))).)))))))))...))))))). ( -29.90)
>DroSec_CAF1 118035 91 - 1
UCGAAAAUGUCCUUGCACACGCCUCUGAAAGAUCCACAUUAAGAGCGGGAUAAUGG----GGUAU-GAGUCG--UGCAUUCGGAGGCAUCUGUGCAGA
............(((((((.(((((((((....((.(((((.........))))))----)((((-(...))--))).)))))))))...))))))). ( -29.30)
>DroSim_CAF1 121811 91 - 1
UCGAAAAUGUCCUUGCACACGCCUCUGAAAGAUCCACAUUAAGAGCGGGAUAAUGG----GGUAU-GAGUCG--UGCAUUCGGAGGCAUCUGUGCAGA
............(((((((.(((((((((....((.(((((.........))))))----)((((-(...))--))).)))))))))...))))))). ( -29.30)
>DroEre_CAF1 123476 91 - 1
UCGAAAAUGUCCUUGCACACGCCUCUGAAAAUGCCACAUUAAUGGCGGGAUACUGG----GGCAU-GAAUCG--UGCAUUCGGAGGCAUCUGUGCAGA
............(((((((.(((((((((..(((((......))))).........----.((((-(...))--))).)))))))))...))))))). ( -33.30)
>DroYak_CAF1 127940 91 - 1
UCGAAAGUGUCCGUGCACACGCCUCUGAAAAUUCCACAUUAAACGCGCGAUAAUGG----GGCAU-GAGUCG--UGCAUUCGGAGGCAUCUGUGCAGA
.(....)......((((((.(((((((((....((.(((((.........))))))----)((((-(...))--))).)))))))))...)))))).. ( -31.10)
>DroMoj_CAF1 177842 84 - 1
-GGACAGUG---CUGCUAACAGCUCUGUAAACGACGC--C--------GACAAUGGCAAGGAUAUCGCGUUGUUGCCAUUCAAAGGCAGCUGUGCAGA
-(.((((((---(((....))))............((--(--------...((((((((.(((.....))).))))))))....))).))))).)... ( -29.80)
>consensus
UCGAAAAUGUCCUUGCACACGCCUCUGAAAAUUCCACAUUAAGAGCGGGAUAAUGG____GGUAU_GAGUCG__UGCAUUCGGAGGCAUCUGUGCAGA
............(((((((.(((((((((.......(((((.........))))).....(((.....))).......)))))))))...))))))). (-16.27 = -17.80 +   1.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:33 2006