Locus 6901

Sequence ID	X_DroMel_CAF1
Location	17,271,995 – 17,272,097
Length	102
Max. P	0.727774

overview

Window 8

Location	17,271,995 – 17,272,097
Length	102
Sequences	4
Columns	115
Reading direction	reverse
Mean pairwise identity	84.82
Mean single sequence MFE	-35.55
Consensus MFE	-22.55
Energy contribution	-23.80
Covariance contribution	1.25
Combinations/Pair	1.00
Mean z-score	-2.08
Structure conservation index	0.63
SVM decision value	0.42
SVM RNA-class probability	0.727774
Prediction	RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17271995 102 - 22224390
CCAUGCCC-UCCGCCCACCAACCGGAUUAUUCCGAGAGUG----UGUGUCCUGGCCAAACA-------ACUUGUUUCUGUUGCCACAUAUUUUCGGG-UGGCCAGGAAAAUAUGU
......((-(((((((.......(((....)))(((((((----((((.(..(((.((((.-------....))))..)))).))))))))))))))-)))..)))......... ( -31.50)
>DroSec_CAF1 117150 109 - 1
CCACGCCC-UCCGGCCGCCAGCCGGAUUAUUCCGAGAGUG----UGUGUCCUGGCCAAACAAGGACAUACUAGUUUCUAUUGCCACAUAUUUUCGGG-UGGCCAGGAAAAUAUGU
........-((((((((((...((((....))))((((.(----(((((((((......).)))))))))....)))).................))-))))).)))........ ( -39.10)
>DroSim_CAF1 120886 109 - 1
CCACGCCC-UCCGCCCGCCAGCCGGAUUAUUCCGAGAGUG----UGUGUCCUGGCCAAACAAGGACAUACUUGUUUCUGUAGCCACAUAUUUUCGGG-UGGCCAGGAAAAUAUGU
.(((((.(-((.((......))((((....)))).))).)----))))((((((((..(((..((((....))))..))).(((.(........)))-)))))))))........ ( -39.90)
>DroYak_CAF1 127020 115 - 1
CCACAACCGCCCUGCUAACAACCGCAUAAUUCCGAGAGUAUGUAUGUGUCCUGGCCAAACAAGGACAUACUUGUUUCAGUUGCCACAUAUUUUUGGGAUGGCCUGGAAAGUAUGU
......(((((.(((........)))..(((((((((((((((.(((((((((......).))))))))...((.......)).))))))))))))))))))..))......... ( -31.70)
>consensus
CCACGCCC_UCCGCCCACCAACCGGAUUAUUCCGAGAGUG____UGUGUCCUGGCCAAACAAGGACAUACUUGUUUCUGUUGCCACAUAUUUUCGGG_UGGCCAGGAAAAUAUGU
......................((((....))))..............(((((((((((((((......)))))))......((..........))...))))))))........ (-22.55 = -23.80 +   1.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:32 2006