Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 17,271,274 – 17,271,381 |
Length | 107 |
Max. P | 0.519422 |
Location | 17,271,274 – 17,271,381 |
---|---|
Length | 107 |
Sequences | 5 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 83.47 |
Mean single sequence MFE | -22.87 |
Consensus MFE | -15.57 |
Energy contribution | -16.97 |
Covariance contribution | 1.40 |
Combinations/Pair | 1.12 |
Mean z-score | -1.62 |
Structure conservation index | 0.68 |
SVM decision value | -0.03 |
SVM RNA-class probability | 0.519422 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17271274 107 - 22224390 AAAAUUCAAGGGGCACUUAGUUAAGGAGUGACC---CAAAGAAAUGGCAUUGCGUAAAACAAGCAUUUCAUUACUAAUUUCAAACUUGUUAGCUA--CUCGCAGGAAAAAAU ......((((((((((((.......))))).))---)...((((((.(.(((.......))))))))))...............))))...((..--...)).......... ( -19.80) >DroSec_CAF1 116435 107 - 1 AAAAUUCAAAGGGCACUUAGUUAAGGAGUGACC---CAAAGAAAUGGCAUUGCGUAAAACAAGCAUUUCUUUUCUAAUUUCAAACUUGUUAGCUA--CUUGCAGAAAAAAAU ............(((..(((((((.((((....---...(((((.((...(((.........)))..)).)))))........)))).)))))))--..))).......... ( -20.96) >DroSim_CAF1 120171 107 - 1 AAAAUUCAAGGGGCACUUAGUUAAGGAGUGACC---CAAAGAAAUGGCAUUGCGUAAAACAAGCAUUUCUUUUCUAAUUUCAAACUUGUUAGCUA--CUUGCAGUAAAAAAU ......((((((((((((.......))))).))---)(((((((((.(.(((.......)))))))))))))............))))...((..--...)).......... ( -22.30) >DroEre_CAF1 121044 108 - 1 AAAAUUCGAG-GGCACUCAGUUAGGGAGUGUUCCCACAAAAAAUUGGCAUUGCUUAAAACAAGCAUUUCAUUUCUAAUUUGAAACUUGUUUGCUG--CUUGC-GGGAAAACC .........(-(((((((.......))))))((((.(((....)))(((..((...(((((((..(((((.........))))))))))))...)--).)))-))))...)) ( -28.40) >DroYak_CAF1 126321 95 - 1 --------------ACUCAGUUGAGGAGUGACC---CAAAGAAAUGGCAUUGCUUAAAACAAGCAUUUCAUUUCUAAUUUCAAACUUGUUUGCUGUACUGGCAGGGAAAAAC --------------.(((....)))......((---(..((((((((...(((((.....)))))..))))))))...............((((.....)))))))...... ( -22.90) >consensus AAAAUUCAAGGGGCACUUAGUUAAGGAGUGACC___CAAAGAAAUGGCAUUGCGUAAAACAAGCAUUUCAUUUCUAAUUUCAAACUUGUUAGCUA__CUUGCAGGAAAAAAU ............(((..(((((((.((((..........((((((((...(((.........)))..))))))))........)))).)))))))....))).......... (-15.57 = -16.97 + 1.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:31 2006