Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 17,271,129 – 17,271,235 |
Length | 106 |
Max. P | 0.991263 |
Location | 17,271,129 – 17,271,235 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 78.49 |
Mean single sequence MFE | -25.48 |
Consensus MFE | -11.86 |
Energy contribution | -12.22 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.21 |
Mean z-score | -2.79 |
Structure conservation index | 0.47 |
SVM decision value | 2.26 |
SVM RNA-class probability | 0.991263 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17271129 106 + 22224390 AAAAUAUGGGCGGCCAACAGACUUCAAUUUCAAUGGAUUGAAUUUGCCAUUUUUCCACU-CUGCAAAUACAAUCCCUAAAUUGGGAUUUAUUUU----UGAAGA-GGGCACA ............(((..((((.(((((((......)))))))))))...........((-((.((((...((((((......))))))....))----)).)))-))))... ( -27.00) >DroSec_CAF1 116296 100 + 1 AAAAUAUGGGCGGCCAACAGACUUCAAUUUCAAUGGAUUGAAUUUCCCAUUUUAACCCUCCUUCAAAUACAAUCCCUAAAAUGGGAUUUCCUUU----UGAAAU-------- ..((.(((((.(.....)....(((((((......)))))))...))))).))........((((((...((((((......))))))....))----))))..-------- ( -20.30) >DroSim_CAF1 120032 100 + 1 AAAAUAUGGGCGGCCAACAGACUUCAAUUCCAAUGGAUUGAAUUUCCCAUUUUAACCCUCCUUCAAAUACAAUCCCUAAAAUGGGAUUUCCUUU----UGAAAU-------- ..((.(((((.(.....)....((((((((....))))))))...))))).))........((((((...((((((......))))))....))----))))..-------- ( -21.80) >DroEre_CAF1 120899 106 + 1 GAAAUGUGUGCGGUAAGCUGAAUUCAAUUUCACUGGAUUGAAUUAGCCAUUCUUGCCCU-UUGCAAAUACAAUCCCUAAAAUGGGAUUUAUUUU----UA-AAUGGGGCACA ......(((((.....(((((.(((((((......))))))))))))........((((-(((.(((((.((((((......))))))))))).----))-)).)))))))) ( -33.00) >DroYak_CAF1 126169 106 + 1 UAAAUGCGUGCGGCAAGCUGACUUCAAUUUCACUGGAUUGGUUUUGCCAUUUUUCCCCUUUUGCAAAUGCCAUCCUUAAAAUGGGAUUUUCUUUUUUGUG-AAUGGG----- ...........(((((((..(.((((.......)))))..).)))))).......(((.((..((((....(((((......))))).......))))..-)).)))----- ( -25.30) >consensus AAAAUAUGGGCGGCCAACAGACUUCAAUUUCAAUGGAUUGAAUUUGCCAUUUUUACCCU_CUGCAAAUACAAUCCCUAAAAUGGGAUUUACUUU____UGAAAU_GG_____ ...........(((....(((.(((((((......)))))))))))))......................((((((......))))))........................ (-11.86 = -12.22 + 0.36)
Location | 17,271,129 – 17,271,235 |
---|---|
Length | 106 |
Sequences | 5 |
Columns | 112 |
Reading direction | reverse |
Mean pairwise identity | 78.49 |
Mean single sequence MFE | -25.24 |
Consensus MFE | -8.50 |
Energy contribution | -9.74 |
Covariance contribution | 1.24 |
Combinations/Pair | 1.06 |
Mean z-score | -2.16 |
Structure conservation index | 0.34 |
SVM decision value | 0.66 |
SVM RNA-class probability | 0.815979 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17271129 106 - 22224390 UGUGCCC-UCUUCA----AAAAUAAAUCCCAAUUUAGGGAUUGUAUUUGCAG-AGUGGAAAAAUGGCAAAUUCAAUCCAUUGAAAUUGAAGUCUGUUGGCCGCCCAUAUUUU (((((((-(((.((----((....((((((......))))))...)))).))-)).))......(((...((((((........))))))(((....))).))))))).... ( -27.20) >DroSec_CAF1 116296 100 - 1 --------AUUUCA----AAAGGAAAUCCCAUUUUAGGGAUUGUAUUUGAAGGAGGGUUAAAAUGGGAAAUUCAAUCCAUUGAAAUUGAAGUCUGUUGGCCGCCCAUAUUUU --------.(((((----((....((((((......))))))...)))))))..((((...((((((...((((((........)))))).))))))....))))....... ( -26.20) >DroSim_CAF1 120032 100 - 1 --------AUUUCA----AAAGGAAAUCCCAUUUUAGGGAUUGUAUUUGAAGGAGGGUUAAAAUGGGAAAUUCAAUCCAUUGGAAUUGAAGUCUGUUGGCCGCCCAUAUUUU --------.(((((----((....((((((......))))))...)))))))..((((...((((((...((((((((...)).)))))).))))))....))))....... ( -27.80) >DroEre_CAF1 120899 106 - 1 UGUGCCCCAUU-UA----AAAAUAAAUCCCAUUUUAGGGAUUGUAUUUGCAA-AGGGCAAGAAUGGCUAAUUCAAUCCAGUGAAAUUGAAUUCAGCUUACCGCACACAUUUC ((((((((.((-(.----.(((((((((((......)))))).)))))..))-))))...(...((((((((((((........)))))))).))))...))))))...... ( -29.40) >DroYak_CAF1 126169 106 - 1 -----CCCAUU-CACAAAAAAGAAAAUCCCAUUUUAAGGAUGGCAUUUGCAAAAGGGGAAAAAUGGCAAAACCAAUCCAGUGAAAUUGAAGUCAGCUUGCCGCACGCAUUUA -----....((-(((......(.((((.(((((.....))))).)))).)......(((....(((.....))).))).)))))..........((.....))......... ( -15.60) >consensus _____CC_AUUUCA____AAAGGAAAUCCCAUUUUAGGGAUUGUAUUUGCAG_AGGGGAAAAAUGGCAAAUUCAAUCCAUUGAAAUUGAAGUCUGUUGGCCGCCCAUAUUUU .............................((.(((..((((((.((((((...............)))))).))))))....))).))........................ ( -8.50 = -9.74 + 1.24)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:30 2006