| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 17,251,647 – 17,251,739 |
| Length | 92 |
| Max. P | 0.789212 |
| Location | 17,251,647 – 17,251,739 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 110 |
| Reading direction | reverse |
| Mean pairwise identity | 79.28 |
| Mean single sequence MFE | -26.25 |
| Consensus MFE | -18.88 |
| Energy contribution | -18.18 |
| Covariance contribution | -0.69 |
| Combinations/Pair | 1.14 |
| Mean z-score | -1.46 |
| Structure conservation index | 0.72 |
| SVM decision value | 0.58 |
| SVM RNA-class probability | 0.789212 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17251647 92 - 22224390 ------------AGCGA---GAGU---CGGUCAAAAUGGCAACGCAAAUUGCACUUAAGCGCCGAGUCAAGCGUCAAGACAGGAAGCCACUUGGCAAAACUUAAGAGCGG ------------.(((.---..((---((.......))))..)))....(((.((((((.(((((((...((.((.......)).)).)))))))....)))))).))). ( -25.20) >DroVir_CAF1 119416 106 - 1 -UUGCCGGCACUAAAGA---CAGGCAGCAGCCAAAAUGGCAACUGAAAUUGCACUUAAGCGUCGAGUCAAGCGUCAAGGCAGGAAGCCGCUUGGCAAAACUUGAGAGCGC -..((((((.((.(((.---(((.(((..(((.....)))..)))...)))..))).)).)))).(((((((.....(((.....))))))))))...........)).. ( -31.50) >DroPse_CAF1 138118 99 - 1 GUC----GA---GGCGAGUCGAGU---CUGUCAAAAUGGCAACUCCAAUUGCACUUAAGCGCCGAGUCAAGCGUCAAGGCAGGAAGCCACUUGGCAAAACUUGAGAGCA- .((----((---(((((...((((---.((((.....))))))))...))))........(((((((..........(((.....))))))))))....))))).....- ( -30.10) >DroWil_CAF1 173901 88 - 1 ---------------AA---GCAC---CGUUGAAAAUGGCAACUCAAAUUGCACUUAAGCGCCGAGUCAAGCGUCAAGGCAGGAAGCCACUUGGCAAAACUUAAGGAGG- ---------------..---(((.---..((((....(....)))))..))).((((((.(((((((..........(((.....))))))))))....))))))....- ( -22.10) >DroYak_CAF1 107247 87 - 1 --------------------GAGU---CGGUCAAAAUGGCAACGCAAAUUGCACUUAAGCGCCGAGUCAAGCGUCAAGACAGGAAGCCACUUGGCAAAACUUAAGAGCAG --------------------..((---..(((.....)))...))....(((.((((((.(((((((...((.((.......)).)).)))))))....)))))).))). ( -22.80) >DroMoj_CAF1 137396 91 - 1 ------------AGAAA---CUGC---CAGCCAAAAUGGCAACUCAAAUUGCACUUAAGCGUCGAGUCAAGCGUCAAGGCAGGAAGCCGCUUGGCAAAACUUGAGAG-GA ------------.....---...(---(.(((.....)))..(((((...((......)).....(((((((.....(((.....)))))))))).....))))).)-). ( -25.80) >consensus ____________AG_GA___GAGU___CGGUCAAAAUGGCAACUCAAAUUGCACUUAAGCGCCGAGUCAAGCGUCAAGGCAGGAAGCCACUUGGCAAAACUUAAGAGCG_ ......................................((((......)))).((((((.(((((((...((.((.......)).)).)))))))....))))))..... (-18.88 = -18.18 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:25 2006