Locus 6892

Sequence ID X_DroMel_CAF1
Location 17,245,776 – 17,245,878
Length 102
Max. P 0.546926
window11271

overview

Window 1

Location 17,245,776 – 17,245,878
Length 102
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 84.13
Mean single sequence MFE -24.79
Consensus MFE -18.64
Energy contribution -18.62
Covariance contribution -0.02
Combinations/Pair 1.14
Mean z-score -1.72
Structure conservation index 0.75
SVM decision value 0.03
SVM RNA-class probability 0.546926
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17245776 102 + 22224390
UUAUGGCGCACAGCGCCAACUGCCAAUUUAAAGACAAUUUGGCCAAGAGGCGCGAUUUCAG-CUAAAUUGCAACACAAAUGCAAACAAUUAGGGACU------CUU-UU-C---------
...((((((...))))))....((............((((((((....)))(((((((...-..)))))))....)))))............))...------...-..-.--------- ( -24.05)
>DroPse_CAF1 129331 112 + 1
UUAUGGCGCACAGCGCCAACUGCCAAUUUAAAGACAAUUUGGCCAAGAGGCGCGAUUUCAG-CUAAAUUGCAACACAAAUGCAAACAAUUAAGGACU------UCU-UUUCCAAACAGUC
...((((((...))))))..............(((..(((((..(((((((((.......)-)....(((((.......))))).........).))------)))-)..)))))..))) ( -27.30)
>DroWil_CAF1 166613 95 + 1
UUAUGGUGAGCAGCGCCAACUGCCAAUUUAAAGACAAUUUGGCCAAGAGGCGAGAUUUCAGACUAAAUUGCAACACAAAUGCAAACAAUUAGGCA-------------------------
...(((((.....)))))...(((........((.(((((.(((....))).)))))))........(((((.......))))).......))).------------------------- ( -23.70)
>DroYak_CAF1 100819 103 + 1
UUAUGGCGCACAGCGCCAACUGCCAAUUUAAAGACAAUUUGGCCAAGAGGCGCGAUUUCAG-CUAAAUUGCAACACAAAUGCAAACAAUUAGGAGCU------CUUUUU-C---------
...((((((...))))))...(((((.((......)).))))).(((((((((.......)-)....(((((.......)))))..........)).------))))).-.--------- ( -24.30)
>DroAna_CAF1 127420 108 + 1
UUAUGGCUCACUGGG-CAACUGCCAAUUUAAAGACAAUUUGGCCAAGAGGCGUGAUUUCGG-CUAAAUUGCAACACAAAUGCAAACAAUUAAGGCAUUCGCAUCUCUCU-C---------
...((((......((-(....)))....((((.....))))))))((((..((((.....(-((...(((((.......)))))........)))..))))..))))..-.--------- ( -22.10)
>DroPer_CAF1 122925 112 + 1
UUAUGGCGCACAGCGCCAACUGCCAAUUUAAAGACAAUUUGGCCAAGAGGCGCGAUUUCAG-CUAAAUUGCAACACAAAUGCAAACAAUUAAGGACU------UCU-UUCCCAAACAGUC
...((((((...))))))..............(((..(((((..(((((((((.......)-)....(((((.......))))).........).))------)))-)..)))))..))) ( -27.30)
>consensus
UUAUGGCGCACAGCGCCAACUGCCAAUUUAAAGACAAUUUGGCCAAGAGGCGCGAUUUCAG_CUAAAUUGCAACACAAAUGCAAACAAUUAAGGACU______CUU_UU_C_________
...((((((...))))))..............(...((((((((....)))(((((((......)))))))....))))).)...................................... (-18.64 = -18.62 +  -0.02)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:17 2006