| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 17,237,346 – 17,237,438 |
| Length | 92 |
| Max. P | 0.739297 |
| Location | 17,237,346 – 17,237,438 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | forward |
| Mean pairwise identity | 76.63 |
| Mean single sequence MFE | -19.20 |
| Consensus MFE | -14.23 |
| Energy contribution | -14.28 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.06 |
| Structure conservation index | 0.74 |
| SVM decision value | 0.45 |
| SVM RNA-class probability | 0.739297 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17237346 92 + 22224390 UAUGACGACGUGCGA-GCCAACCCCUAAUGAUAAUAAUUGCAUGCAAAAUGCAUUUAACCGCAAUUAGUGCAUUUAUUAGGCCAAAAGUUGAU-------------------------- .....((((((....-....)).((((((((...(((((((((((.....))))......)))))))......))))))))......))))..-------------------------- ( -18.70) >DroVir_CAF1 100039 90 + 1 ACUGACGAUGUGCGGUGCCAACCCCUAAUGAUAAUAAUUGCAUGCAAAAUGAAUUUAACCGCAAUUAGUGCAUUUAUUAGGCCAAAAGCU----------------------------- ...........(((((....)))((((((((...(((((((...................)))))))......))))))))......)).----------------------------- ( -16.51) >DroGri_CAF1 106225 118 + 1 GAUGACGAUGUGCGG-GCCAACCCCUAAUGAUAAAAAUUGCAUGUAAAAUGCAUUUAACCGCAAUUAGUGCAUUUAUUGGGCCAGAAGCAGACGCAGAAGCAGAAGCAGAAGCGAACGU ....(((.(.(((.(-(((.......((((.((..((((((...((((.....))))...))))))..)))))).....))))....))).)(((....((....))....)))..))) ( -25.30) >DroEre_CAF1 89610 92 + 1 NNNNNNNNNNNGCGA-GCCAACCCCUAAUGAUAAUAAUUGCAUGCAAAAUGCAUUUAACCGCAAUUAGUGCAUUUAUUAGGCCAAAAGUUGAU-------------------------- ...............-..((((.((((((((...(((((((((((.....))))......)))))))......))))))))......))))..-------------------------- ( -17.00) >DroMoj_CAF1 116265 79 + 1 --------------AUUGCAACCCCUAAUGAUAAUAAUUGCAUGCAAAGUGCAUUUAACCGCAAUUAGUGCAUUUAUUAGGCCAAAAGCUGAC-------------------------- --------------...((....((((((((...(((((((((((.....))))......)))))))......))))))))......))....-------------------------- ( -16.20) >DroAna_CAF1 115779 92 + 1 GACGACGACGUGCCG-GCCAACCCCUAAUGAUAAUAAUUGCAUGCAAAAUGCAUUUAACCGCAAUUAGUGCAUUUAUUAGGCCAAAAGUUGAU-------------------------- .....((((.....(-(((.......((((....(((((((((((.....))))......)))))))...)))).....))))....))))..-------------------------- ( -21.50) >consensus _AUGACGA_GUGCGA_GCCAACCCCUAAUGAUAAUAAUUGCAUGCAAAAUGCAUUUAACCGCAAUUAGUGCAUUUAUUAGGCCAAAAGCUGAU__________________________ .......................((((((((...(((.(((((.....))))).)))...(((.....)))..))))))))...................................... (-14.23 = -14.28 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:14 2006