Locus 6887

Sequence ID X_DroMel_CAF1
Location 17,225,721 – 17,225,812
Length 91
Max. P 0.541950
window11264

overview

Window 4

Location 17,225,721 – 17,225,812
Length 91
Sequences 6
Columns 109
Reading direction forward
Mean pairwise identity 81.05
Mean single sequence MFE -19.73
Consensus MFE -14.13
Energy contribution -14.13
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.23
Structure conservation index 0.72
SVM decision value 0.02
SVM RNA-class probability 0.541950
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17225721 91 + 22224390
-------------UUGGGAAAAUCCUU-----UCGAAUGCACGAAACAGAAAACAGGCAACGAACAUGACAUGCAUUUAUGUCACGUCACAUGUGCAACACGAACACCC
-------------..(((.....)))(-----(((..((((((............(....)((...(((((((....)))))))..))...))))))...))))..... ( -20.30)
>DroPse_CAF1 100634 101 + 1
CGAAGAAAUGGGGCUGGAGAAAUGCU--------GAGCGCACGAAACCGAAAACAGCCAACGAACAUGACAUGCAUUUAUGUCACGUCACAUGUGCAACACGAACACCC
....(..(((.(((((......(((.--------....)))((....))....)))))...((...(((((((....)))))))..)).)))...)............. ( -20.10)
>DroSim_CAF1 73936 85 + 1
-------------UUGGGAAAAUCCUU-----UCGAAUGCACGA------AAACAGGCAACGAACAUGACAUGCAUUUAUGUCACGUCACAUGUGCAACACGAACACCC
-------------..(((.....)))(-----(((..((((((.------.....(....)((...(((((((....)))))))..))...))))))...))))..... ( -20.30)
>DroYak_CAF1 80076 91 + 1
-------------UUGGGAAAAUCCUU-----UCGAAUGCACGAAACAGAAAACAGGCAACGAACAUGACAUGCAUUUAUGUCACGUCACAUGUGCAACACGAACACCC
-------------..(((.....)))(-----(((..((((((............(....)((...(((((((....)))))))..))...))))))...))))..... ( -20.30)
>DroAna_CAF1 104928 89 + 1
--------------------AAUCCUUGCCAGCCGAAGGCACGAAACAGAAAACAGGCAACGAACAUGACAUGCAUUUAUGUCACGUCACAUGUGCAACACGAACACCA
--------------------..((.(((((.(((...))).(......)......))))).))((.(((((((....))))))).))....((((...))))....... ( -17.30)
>DroPer_CAF1 94366 101 + 1
CGAAGAAAUGGGGCUGGAGAAAUGCU--------GAGCGCACGAAACCGAAAACAGCCAACGAACAUGACAUGCAUUUAUGUCACGUCACAUGUGCAACACGAACACCC
....(..(((.(((((......(((.--------....)))((....))....)))))...((...(((((((....)))))))..)).)))...)............. ( -20.10)
>consensus
_____________UUGGGAAAAUCCUU_____UCGAAUGCACGAAACAGAAAACAGGCAACGAACAUGACAUGCAUUUAUGUCACGUCACAUGUGCAACACGAACACCC
......................................(((((............(....)((...(((((((....)))))))..))...)))))............. (-14.13 = -14.13 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:10 2006