Locus 6885

Sequence ID X_DroMel_CAF1
Location 17,212,597 – 17,212,688
Length 91
Max. P 0.990547
window11261

overview

Window 1

Location 17,212,597 – 17,212,688
Length 91
Sequences 4
Columns 110
Reading direction forward
Mean pairwise identity 82.42
Mean single sequence MFE -32.25
Consensus MFE -23.26
Energy contribution -23.82
Covariance contribution 0.56
Combinations/Pair 1.04
Mean z-score -2.77
Structure conservation index 0.72
SVM decision value 2.22
SVM RNA-class probability 0.990547
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17212597 91 + 22224390
CUUGGCCAGGAGUCAGCUAGGGCUCCAG-------------------UCCAGCUAAAGUUCCAGCUCCAGCUGCAGCUCGUUCUGCUCCAUCCCAACGGAGAUCCAUUAC
.((((...((((.(((...(((((.(((-------------------(..((((........))))...)))).)))))...)))))))...)))).((....))..... ( -30.20)
>DroSec_CAF1 58445 91 + 1
CUUGGGCAGGAGUCAGCUAGGGCUCCAG-------------------UCCAGCUAAAGUUCCAGCUCCAGCUGCAGCUCGAUCUGCUCCAUCCCAACGGAGAUCCAUUAC
.(((((..((((.(((...(((((.(((-------------------(..((((........))))...)))).)))))...)))))))..))))).((....))..... ( -33.70)
>DroSim_CAF1 63497 91 + 1
CUUGGGCAGGAGUCAGCUAGGGCUCCAG-------------------UCCAGCUAAAGUUCCAGCUCCAGCUGCAGCUCGAUCUGCUCCAGCCCAACGGAGAUCCAUUAC
.((((((.((((.(((...(((((.(((-------------------(..((((........))))...)))).)))))...))))))).)))))).((....))..... ( -37.80)
>DroYak_CAF1 65451 110 + 1
CUUGGCCAGGAGUCAACUUCAACUCCAGCUUCAGCUUCAGCUCCAGCUCCAUCUUCAGUUCCAGCUCCAGCUCCAGCUCCAUCUGCUCCAUUGCGACGGAGAUCCAUUAC
..(((...((((....))))..((((((((..((((..((((..((((........))))..))))..))))..)))).....(((......)))..))))..))).... ( -27.30)
>consensus
CUUGGCCAGGAGUCAGCUAGGGCUCCAG___________________UCCAGCUAAAGUUCCAGCUCCAGCUGCAGCUCGAUCUGCUCCAUCCCAACGGAGAUCCAUUAC
..(((...((((((......)))))).......................(((....((((.((((....)))).))))....)))((((........))))..))).... (-23.26 = -23.82 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:08 2006