Locus 6881

Sequence ID X_DroMel_CAF1
Location 17,202,109 – 17,202,229
Length 120
Max. P 0.526309
window11255

overview

Window 5

Location 17,202,109 – 17,202,229
Length 120
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 85.37
Mean single sequence MFE -28.86
Consensus MFE -19.74
Energy contribution -19.98
Covariance contribution 0.24
Combinations/Pair 1.16
Mean z-score -1.68
Structure conservation index 0.68
SVM decision value -0.01
SVM RNA-class probability 0.526309
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17202109 120 + 22224390
ACAGGGAGCCUCUUUACAUAAUUAAUCAGUUUAUAAAUGCUUUCUGCCUUUUUCGUAAAGUCAUCGACUUUGGCUACACUGGGCGAAAAAUGGGCAGGUUCAAGGCACCUGUUCUAGAUA
(((((..((((....((..........(((........)))..(((((((((((.(((((((...)))))))(((......))))))))..))))))))...)))).)))))........ ( -32.70)
>DroSec_CAF1 47636 120 + 1
ACAGGGAGCCUCUUUACAUAAUUAAUCAGUUUAUAAAUGCUUUCUGCCUUUUUCGUAAAGUCAUCGACUUUGGCUACACUGGGCGAAAAUUGGGCAGGUUCAAGGCACCUGUUCUAGAUA
(((((..((((....((..........(((........)))..(((((((((((.(((((((...)))))))(((......))))))))..))))))))...)))).)))))........ ( -32.70)
>DroSim_CAF1 52316 120 + 1
ACAGGGAGCCUCUUUACAUAAUUAAUCAGUUUAUAAAUGCUUUCUGCCUUUUUCGUAAAGUCAUCGACUUUGUCUACACUGGGCGAAAAUUGGGCAGGUUCAAGGCACCUGUUCUAGAUA
(((((..((((....((..........(((........)))..(((((((((((((..(((....(((...)))...)))..)))))))..))))))))...)))).)))))........ ( -32.60)
>DroEre_CAF1 54642 102 + 1
ACAGGAAGCCUCUUUACAUAAUUAAUCAGUUUUUAAAUGCUCUCUGCCUUUUUCGUAGAGUCAUCGGCUUUGGCUACACUGCACGAA-AGUGGGC-----------AGCUGUUU------
((((((((((...........((((.......))))(((..((((((.......)))))).))).)))))).......((((((...-.))..))-----------))))))..------ ( -24.20)
>DroYak_CAF1 54127 109 + 1
ACAGGAAGCCUCUUUACAUAAUUAAUCAGCUUAUAAAUGCCUACUGCCUUUUUCGUAAAGUCAUCGACUUUGGCUACACUACACGAAAAACGGGC-----------ACCUGUUCUGUAUA
(((((((((....(((......)))...))))............((((((((((((((((((...))))))(....).....)))))))..))))-----------))))))........ ( -22.10)
>consensus
ACAGGGAGCCUCUUUACAUAAUUAAUCAGUUUAUAAAUGCUUUCUGCCUUUUUCGUAAAGUCAUCGACUUUGGCUACACUGGGCGAAAAAUGGGCAGGUUCAAGGCACCUGUUCUAGAUA
(((((((((....(((......)))...))))...........(((((((((((((((((((...))))))(....).....)))))))..))))))..........)))))........ (-19.74 = -19.98 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:02 2006