Locus 6880

Sequence ID X_DroMel_CAF1
Location 17,201,836 – 17,201,931
Length 95
Max. P 0.983967
window11254

overview

Window 4

Location 17,201,836 – 17,201,931
Length 95
Sequences 5
Columns 95
Reading direction reverse
Mean pairwise identity 96.53
Mean single sequence MFE -25.44
Consensus MFE -24.24
Energy contribution -24.44
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -1.61
Structure conservation index 0.95
SVM decision value 1.96
SVM RNA-class probability 0.983967
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17201836 95 - 22224390
UUAUAUAUUGGAGGACAAUGGUGGCCAUUUGAGCGGUCGAUCGGCGGCUAUUAUAAAAUCGUUAAUAAACGCUUGUCAAUUUCCAGUAAAGUGUA
.....(((((((.(((((((((.(((..((((....))))..))).)))))).......((((....))))...)))....)))))))....... ( -25.60)
>DroSec_CAF1 47365 95 - 1
UUAUAUAUUGGAGGACAAUGGUGGCCAUUUGAGCGGUCGAUCGGCGGCUAUUAUAAAAUCGUUAAUAAACGCUUGUCAAUUUCCAGUAAAGUGUA
.....(((((((.(((((((((.(((..((((....))))..))).)))))).......((((....))))...)))....)))))))....... ( -25.60)
>DroSim_CAF1 52043 95 - 1
UUCUAUAUGGGAGGACAAUGGUGGCCAUUUGAGCGGUCGAUCGGCGGCUAUUAUAAAAUCGUUAAUAAACGCUUGUCAAUUUCCAGUAAAGUGUA
.......(((((.(((((((((.(((..((((....))))..))).)))))).......((((....))))...)))...))))).......... ( -23.30)
>DroEre_CAF1 54398 94 - 1
GUGUAUAUUGGAGGACAAUG-UGGCCAUUGGAGCGGUCGAUCGGCGGCUAUUAUAAAAUCGUUAAUAAACGCUUGUCAAUUUCCAGUAAAGUGUA
.....(((((((((......-.((((........))))(((.((((..(((((.........)))))..)))).)))..)))))))))....... ( -25.00)
>DroYak_CAF1 53847 95 - 1
GUGUAUAUUGGAGGACAAUGGUGGCCAUUCGAGCGGUCGAUCGGCGGCUAUUAUAAAAUCGUUAAUAAACGCUUGUCAGUUUCCAGUAAAGUGUA
.....(((((((.(((((((((.(((..((((....))))..))).)))))).......((((....))))...)))....)))))))....... ( -27.70)
>consensus
UUAUAUAUUGGAGGACAAUGGUGGCCAUUUGAGCGGUCGAUCGGCGGCUAUUAUAAAAUCGUUAAUAAACGCUUGUCAAUUUCCAGUAAAGUGUA
.....(((((((((........((((........))))(((.((((..(((((.........)))))..)))).)))..)))))))))....... (-24.24 = -24.44 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:01 2006