Locus 6879

Sequence ID X_DroMel_CAF1
Location 17,201,684 – 17,201,797
Length 113
Max. P 0.629467
window11253

overview

Window 3

Location 17,201,684 – 17,201,797
Length 113
Sequences 5
Columns 115
Reading direction forward
Mean pairwise identity 81.29
Mean single sequence MFE -31.50
Consensus MFE -21.54
Energy contribution -21.98
Covariance contribution 0.44
Combinations/Pair 1.04
Mean z-score -1.68
Structure conservation index 0.68
SVM decision value 0.20
SVM RNA-class probability 0.629467
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17201684 113 + 22224390
CCGAAAAGACCCAAAAUGAGUCGAGAUCUGUCUCUAUCGCCCGAAGGGCCCUUCCA--AAAACGGAGGGACAUUGGAUAUUGGGCGCGGGGGAACUUUGGAUUUCUAUACGAAAU
.((....(((.(.....).)))(((((((.(((((..(((((((...(.((((((.--.....)))))).)........)))))))..))))).....)))))))....)).... ( -34.30)
>DroSec_CAF1 47213 112 + 1
CCGAAAAGACCCAAAAUGAGUCGAGAUCUGUCUCUAUCGCCCGAAGGGCCCUUCCA--A-AACGGAGGGACAUUGGAUAUUGGGCGCGGGGGAACUUUGGAUUUCUAUACGAAAU
.((....(((.(.....).)))(((((((.(((((..(((((((...(.((((((.--.-...)))))).)........)))))))..))))).....)))))))....)).... ( -34.10)
>DroSim_CAF1 51892 112 + 1
CCGAAAAGACCCAAAAUGAGUCGAGAUCUGUCUCUAUCGCCCAAAGGGCCUUUCCA--A-AAGGGAGGGACAUUGGAUAUUGGGCGCGGGGGAACUUUGGAUUUCUAUACGAAAU
.((....(((.(.....).)))(((((((.(((((..(((((((.((.(((((((.--.-..)))))))...)).....)))))))..))))).....)))))))....)).... ( -34.90)
>DroEre_CAF1 54273 86 + 1
CCGAAAAGAC-CAAAAUGAGUCGAGAUCUGACUCCAUAGCCCGAAGGGCCCUUCCA----AACGGAGGGAUAUUGG------------------------AUUUCUAUACGGAAU
(((....(((-(.....).)))((((((..(.......((((...))))((((((.----...))))))...)..)------------------------)))))....)))... ( -28.80)
>DroYak_CAF1 53711 97 + 1
UCGAAAAUACCCAAAAUGAGUCGAGAUCUGUCUCUAUUGCCCGAAGGGCCCUUCCACCAAAGCGGAGGGAUAUUGGACA------------------GGGAUUUCUAUACGAAAU
......................(((((((.(.((((..((((...))))((((((........))))))....)))).)------------------.))))))).......... ( -25.40)
>consensus
CCGAAAAGACCCAAAAUGAGUCGAGAUCUGUCUCUAUCGCCCGAAGGGCCCUUCCA__A_AACGGAGGGACAUUGGAUAUUGGGCGCGGGGGAACUUUGGAUUUCUAUACGAAAU
.((....(((.(.....).)))(((((((.........((((...))))((((((........)))))).............................)))))))....)).... (-21.54 = -21.98 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:25:00 2006