Locus 6878

Sequence ID X_DroMel_CAF1
Location 17,201,053 – 17,201,151
Length 98
Max. P 0.548658
window11252

overview

Window 2

Location 17,201,053 – 17,201,151
Length 98
Sequences 6
Columns 110
Reading direction reverse
Mean pairwise identity 79.09
Mean single sequence MFE -28.50
Consensus MFE -17.36
Energy contribution -18.24
Covariance contribution 0.88
Combinations/Pair 1.19
Mean z-score -1.48
Structure conservation index 0.61
SVM decision value 0.03
SVM RNA-class probability 0.548658
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17201053 98 - 22224390
------GGCCUAAGCUGCUUAUUUAGCAAAUUGCUUGGGAUUGUUCCCGCUCAAAAUGUCUACAUUAGGGACAUUC------GCAUUCCGGCAACAGAAAGCGGGCGAAA
------..(((((((((((.....))))....)))))))........(((((..(((((((.......))))))).------((.(((.(....).))).)))))))... ( -32.90)
>DroSec_CAF1 46571 104 - 1
------GGCCUAAGCUGCUUAUUUAGCAAAUUGCUUGGGAUUGUCCCCGCUCAAAAUGUCUACAUUAGGGACAUUCGCAUUCGCAUUCCGCCAACAGAAAGCGGGCGAAA
------..(((((((((((.....))))....)))))))..((((((.......((((....)))).))))))(((((...(((.(((........))).))).))))). ( -32.30)
>DroSim_CAF1 51248 104 - 1
------GGCCUAAGCUGCUUAUUUAGCAAAUUGCUUGGGAUUGUCCCCGCUCAAAAUGUCUACAUUAGGGACAUUCGCAUUCGCAUUCCGCCAACAGAAAGCGGGCGAAA
------..(((((((((((.....))))....)))))))..((((((.......((((....)))).))))))(((((...(((.(((........))).))).))))). ( -32.30)
>DroEre_CAF1 53760 98 - 1
------GGCCUAAGCUGCUUAUUUAGCAAAUUGCUUGGGCUUGUCUACGCUCAAAAUGUCUACAUUAGGGAAAUUC------GCCAGCCACCAGCAGAAAGCGGGCGAAG
------(((((((((((((.....))))....)))))))))........(((..((((....)))).)))...(((------(((.((............)).)))))). ( -29.00)
>DroYak_CAF1 53098 98 - 1
------GGCCUAAGCUGCUUAUUUAGCAAAUUGCUUGGGAUUGUCUCCGCUCAAAAUGUCUACAUUAGGGAAACUC------GCAUUCCGCCAACAGAAAACGGGUGAAA
------..(((((((((((.....))))....)))))))........(((((..((((....))))..((((....------...)))).............)))))... ( -22.70)
>DroPer_CAF1 64542 85 - 1
CGUCCGACCCUAAGUUGCUUAUUUAGCAAAUUGGUUGGGAUCGUCCCGGUACAAAAUGUCUACAUUAA-------------------------ACGCGGAGUGGGAGCAA
..(((((((.....(((((.....)))))...))))))).(((..(((((....((((....))))..-------------------------)).)))..)))...... ( -21.80)
>consensus
______GGCCUAAGCUGCUUAUUUAGCAAAUUGCUUGGGAUUGUCCCCGCUCAAAAUGUCUACAUUAGGGACAUUC______GCAUUCCGCCAACAGAAAGCGGGCGAAA
........(((((((((((.....))))....)))))))....((((((((...((((....)))).((((..............))))..........)))))).)).. (-17.36 = -18.24 +   0.88)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:59 2006