Locus 6877

Sequence ID X_DroMel_CAF1
Location 17,199,215 – 17,199,308
Length 93
Max. P 0.866527
window11251

overview

Window 1

Location 17,199,215 – 17,199,308
Length 93
Sequences 3
Columns 105
Reading direction forward
Mean pairwise identity 86.14
Mean single sequence MFE -29.23
Consensus MFE -20.49
Energy contribution -20.93
Covariance contribution 0.45
Combinations/Pair 1.04
Mean z-score -2.83
Structure conservation index 0.70
SVM decision value 0.85
SVM RNA-class probability 0.866527
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17199215 93 + 22224390
CCACUCUUCUUCCAGCCCCAUCUUCAAACUCGAAUUCGGAUUUGGAUUCAGAUUC------------AGAUUCGGGGGCGACUGCCUUUGCUUCCGCAUGGACUU
..........(((((((((...(((......)))..(((((((((((....))))------------)))))))))))).........(((....)))))))... ( -28.00)
>DroSec_CAF1 44776 93 + 1
CCACUCUUCUUCCAGCCCCAUCUUCAAGCUCGAAUUCGGAUUUGGAUUCAGAUUC------------AGAUUCGGGGGCUACUGCCUCUGCUUCCGCAUGGACUU
..........(((((((((...(((......)))..(((((((((((....))))------------)))))))))))))........(((....))).)))... ( -27.60)
>DroEre_CAF1 52064 105 + 1
CCACUCAUCUUCCAGCCCCAUCUUCAAACGCGGAUUCGGAUUUGGAUUCAGAUUCAGAUUCGGAUUCCGAUUCUGGGGCUACUGCCUCUGCUUCCGCAUUGACUU
.............(((((((........((.((((((((((((((((....))))))))))))))))))....))))))).....(..(((....)))..).... ( -32.10)
>consensus
CCACUCUUCUUCCAGCCCCAUCUUCAAACUCGAAUUCGGAUUUGGAUUCAGAUUC____________AGAUUCGGGGGCUACUGCCUCUGCUUCCGCAUGGACUU
..........(((((((((...((((((..((....))..))))))....((.((.((.......)).)).)).))))).........(((....)))))))... (-20.49 = -20.93 +   0.45)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:59 2006