Locus 6874

Sequence ID X_DroMel_CAF1
Location 17,172,952 – 17,173,066
Length 114
Max. P 0.872873
window11248

overview

Window 8

Location 17,172,952 – 17,173,066
Length 114
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 81.32
Mean single sequence MFE -26.73
Consensus MFE -17.63
Energy contribution -17.97
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.45
Structure conservation index 0.66
SVM decision value 0.88
SVM RNA-class probability 0.872873
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17172952 114 - 22224390
AUCCCGGCAUCCAGCAAU---AUCAUU--CCCACG-UUGGGCGCCAUUUUUGUUAAAAAGUUUAAUUUGGCAUAAGUGCGCGCCAUUUUGGAGCAUUUUCUUCAAAUUUUUUGGGGUCAU
((((((((..(((((...---......--.....)-))))((((.((((.(((((((........))))))).)))))))))))..(((((((......)))))))......)))))... ( -34.24)
>DroPse_CAF1 33114 115 - 1
AUA-CAGCAACCAGCAUC---AUCAUUUCCCCACU-UUGAGCGCCAUUUUUGUUAAAAAGUUUAAUUUGGCAUAAGUGCGCGCCAUUUUGCAGCAUUUUCUUCAACUUUUAUUUAUUCUU
...-..((((........---.(((..........-.)))(((((((((.(((((((........))))))).))))).))))....))))............................. ( -19.30)
>DroEre_CAF1 23450 100 - 1
AUCC-----------------AUGAGU--UCCACG-UUGGGCGCCAUUUUUGUUAAAAAGUUUAAUUUGGCAUAAGUGCGCGCCAUUUUGGAGCAUUUUCUUCAAAUUUUUUGGGGACAU
....-----------------....((--((((..-...((((((((((.(((((((........))))))).))))).)))))....))))))....(((((((.....)))))))... ( -32.80)
>DroYak_CAF1 24631 117 - 1
AUCCCGGCAUCCAGCAUCAUCAUCAUU--UCCACG-UUGGGCGCCAUUUUUGUUAAAAAGUUUAAUUUGGCAUAAGUGCGCGCCAUUUUGGAACAUUUUCUUCAAAUUUUUAGGGGGAUU
((((((((..(((((............--.....)-))))((((.((((.(((((((........))))))).)))))))))))..((((((........))))))........))))). ( -32.33)
>DroAna_CAF1 32092 107 - 1
--UCCAGAAUCCAGCAUCA----C-UU--UCCACUUUUGGGCGCCAUUUUUGUUAAAAAGUUUAAUUUGGCAUAAGUGCGCGCCAUUUUGCAGCAUUUUCUUCACUUUUUUUCUG----U
--..(((((....(((...----.-..--..((....))((((((((((.(((((((........))))))).))))).)))))....)))((......)).........)))))----. ( -22.40)
>DroPer_CAF1 28032 115 - 1
AUA-CAGCAACCAGCAUC---AUCAUUUCCCCACU-UUGAGCGCCAUUUUUGUUAAAAAGUUUAAUUUGGCAUAAGUGCGCGCCAUUUUGCAGCAUUUUCUUCAACUUUUAUUUAUUCUU
...-..((((........---.(((..........-.)))(((((((((.(((((((........))))))).))))).))))....))))............................. ( -19.30)
>consensus
AUCCCAGCAUCCAGCAUC___AUCAUU__CCCACG_UUGGGCGCCAUUUUUGUUAAAAAGUUUAAUUUGGCAUAAGUGCGCGCCAUUUUGCAGCAUUUUCUUCAAAUUUUUUGGGGUCUU
.......................................((((((((((.(((((((........))))))).))))).))))).................................... (-17.63 = -17.97 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:56 2006