Locus 6873

Sequence ID X_DroMel_CAF1
Location 17,172,213 – 17,172,316
Length 103
Max. P 0.938506
window11247

overview

Window 7

Location 17,172,213 – 17,172,316
Length 103
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 78.20
Mean single sequence MFE -34.33
Consensus MFE -18.72
Energy contribution -20.64
Covariance contribution 1.92
Combinations/Pair 1.18
Mean z-score -2.43
Structure conservation index 0.55
SVM decision value 1.29
SVM RNA-class probability 0.938506
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17172213 103 + 22224390
UCCAGACAUCUGGGGGAUGUGUGGGGCGUGUCUGGCGAUUUAUG------------GCACUUCCCCACCCCAAAG----CUAUAUCCCCUUCAUGUACUCGUAUACUAUAUACUGGAUC
(((((((((..(((((((((((((((.(((((...........)------------))))..)))))).......----..)))))))))..))))....((((...)))).))))).. ( -37.50)
>DroPse_CAF1 32181 104 + 1
-----GCGAUUGGGAUGUGUAUGGGGCGUGUCUGGAAAUUUACGAGUACCAGUAUUGCACCUUCUAUCCAGACAG----CCAGUACCCCUACCCGUACCCGUGUC------AGUCCCCC
-----..((((((.(((.(((((((((.((((((((........((((....))))..........)))))))))----)).(((....))))))))).))).))------)))).... ( -34.47)
>DroSec_CAF1 17300 103 + 1
UCCAGACAUCUGGGGGAUGUGUGGGGCGUGUCUGGCGAUUUAUG------------GCACUUCCCCACCCCAAAG----CUAUAUCCCCUUCAUAUACUCGUAUACUAUAUACUGGAUC
(((((......(((((((((((((((.(((((...........)------------))))..)))))).......----..)))))))))...((((....)))).......))))).. ( -35.00)
>DroSim_CAF1 23650 103 + 1
UCCAGACAUCUGGGGGAUGUGUGGGGCGUGUCUGGCGAUUUAUG------------GCACUUCCCCACCCCAAAG----CUAUAUCCCCUUCAUAUACUCGUAUACUAUAUACUGGAUC
(((((......(((((((((((((((.(((((...........)------------))))..)))))).......----..)))))))))...((((....)))).......))))).. ( -35.00)
>DroEre_CAF1 22771 107 + 1
UCCAGACAUCUGGGGGAUGUGUGGGGCGUGUCUGGCGAUUUAUG------------GCACUUCCCCAACCCAAAGCUACAUAUAUCCCCUUCAUAUACUCGGAUACUAUAUACUGGAUC
(((((......((((((((((((..((..(..(((.((......------------.....)).)))..)....))..))))))))))))..(((((.........))))).))))).. ( -32.50)
>DroYak_CAF1 23911 105 + 1
UUCAGACAUCUGGGGGAUGUGUGGGGCGUGUCUGGCGAUUUAUG------------GCACUUCCCCCACCCCAAACG--CUAUAUCCCCUUCAUAUACUCGUAUACUAUAUACUGGAUC
(((((......(((((((((((((((.(((((...........)------------))))...))))))........--..)))))))))...((((....)))).......))))).. ( -31.50)
>consensus
UCCAGACAUCUGGGGGAUGUGUGGGGCGUGUCUGGCGAUUUAUG____________GCACUUCCCCACCCCAAAG____CUAUAUCCCCUUCAUAUACUCGUAUACUAUAUACUGGAUC
(((((......(((((((((((((((.((((.........................))))..))))).............))))))))))...((((....)))).......))))).. (-18.72 = -20.64 +   1.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:55 2006