Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 1,907,582 – 1,907,682 |
Length | 100 |
Max. P | 0.874394 |
Location | 1,907,582 – 1,907,682 |
---|---|
Length | 100 |
Sequences | 5 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 85.53 |
Mean single sequence MFE | -32.86 |
Consensus MFE | -30.10 |
Energy contribution | -29.42 |
Covariance contribution | -0.68 |
Combinations/Pair | 1.17 |
Mean z-score | -1.70 |
Structure conservation index | 0.92 |
SVM decision value | 0.89 |
SVM RNA-class probability | 0.874394 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 1907582 100 - 22224390 CAGAGUGCGGGUCGUCUGUUGGGUCGAAUUGAGUAUUGUUUGCCUUUUGAAAAGAAAAACAGGCGGUUCUAGGGAAAACUCUUUGGCAACGGCACGAAUA-------------------- ....((((....((((((((.((.(((((........)))))))((((....)))).))))))))((((((((((....))))))).))).)))).....-------------------- ( -29.50) >DroSec_CAF1 3052 100 - 1 CAGAGUGCGGGUCGUCUGUUGGGGCGAAUUGAGUAUCGUUUGCCUUUUGAAAAGAAAAACAGGCGGUUCUGGGGAAAACUCUUUGGCAACAGCACGAAUA-------------------- ....(((((..(((((((((.((((((((........))))))))(((....)))..)))))))))..).(((.....)))..((....)))))).....-------------------- ( -33.70) >DroSim_CAF1 3298 100 - 1 CAGAGUGCGGGUCGUCUGUUGGGGCGAAUUGAGUAUCGUUUGCCUUUUGAAAAGAAAAACAGGCGGUUCUGGGGAAAACUCUUUGGCAACGGCACGAAUA-------------------- ....(((((..(((((((((.((((((((........))))))))(((....)))..)))))))))..).(((.....)))..((....)))))).....-------------------- ( -32.80) >DroEre_CAF1 869 108 - 1 CAAAGUGCGGGUCGUCUGUUGGGGCGAAUUGAGUAUCGUUUGCCUUUUGAAAAGGAAAACAGGCGGUUC-GGGGAAAACUCUUUGGCAGCGGCACGAAUACGAGUACGA----------- ....(((((..(((((((((..(((((((........)))))))((((....)))).)))))))))..)-(((.....)))((((((....)).)))).....))))..----------- ( -32.60) >DroYak_CAF1 3517 119 - 1 CAAAGUGCGGGUCGUCUGUUGUGGCGAAUUGAGUAUCGUUUGCCUCUUGAAAGGGAAAACAGGCGGUUC-GGGGAAAACUCUUUGGCAGCGGUACUAAUACGAAUUCGAAUACGUAUAUG ...((((((..(((((((((..(((((((........)))))))((((....)))).)))))))))..)-(((.....)))..........))))).(((((.((....)).)))))... ( -35.70) >consensus CAGAGUGCGGGUCGUCUGUUGGGGCGAAUUGAGUAUCGUUUGCCUUUUGAAAAGAAAAACAGGCGGUUCUGGGGAAAACUCUUUGGCAACGGCACGAAUA____________________ ....(((((..(((((((((..(((((((........)))))))((((....)))).)))))))))..).((((....)))).........))))......................... (-30.10 = -29.42 + -0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:51:07 2006