| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 17,142,604 – 17,142,695 |
| Length | 91 |
| Max. P | 0.580340 |
| Location | 17,142,604 – 17,142,695 |
|---|---|
| Length | 91 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 81.02 |
| Mean single sequence MFE | -24.39 |
| Consensus MFE | -19.10 |
| Energy contribution | -18.46 |
| Covariance contribution | -0.64 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.21 |
| Structure conservation index | 0.78 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.580340 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17142604 91 - 22224390 -----------------------A-CGG----UCGAGAAUAUCGCCAUUUGGCGUUGACAAUAUUUUUCAUGCUAAGAGACUUUUAAGCUGUCAGCGCGCGGCGCUCAUAAAAAUCGAC -----------------------.-..(----((((...(((((((.....(((((((((...........(((.(((....))).))))))))))))..))))...)))....))))) ( -22.60) >DroPse_CAF1 7882 112 - 1 AACAGAGCAGCCAACAACCACAAA-CAA----UCGAGA--AUCGCCAUUUGGCGUUGACAAUAUUUUUCAUGCUAAGAGACUUUUAAGCUGUCAACGCGCGGCGCUCAUAAAAAUCGAC ....((((.(((........((((-...----.((...--..))...))))(((((((((...........(((.(((....))).))))))))))))..)))))))............ ( -27.50) >DroSec_CAF1 5600 91 - 1 -----------------------A-CGG----UCGGGAAUAUCGCCAUUUGGCGUUGACAAUAUUUUUCAUGCUAAGAGACUUUUAAGCUGUCAACGCGCGGCGCUCAUAAAAAUCGAC -----------------------.-..(----((((...(((((((.....(((((((((...........(((.(((....))).))))))))))))..))))...)))....))))) ( -21.70) >DroEre_CAF1 6404 91 - 1 -----------------------A-CGG----CCGAGAAUAUCGCCAUUUGGCGUUGACAAUAUUUUUCAUGCUAAGAGACUUUUAAGCUGUCAGCGCGCCGCGCUCAUAAAAAUCGGC -----------------------.-.((----(.((.....))))).....(((((((((...........(((.(((....))).))))))))))))((((.............)))) ( -22.12) >DroAna_CAF1 4915 94 - 1 -----------------------AUCGGGGAAUCGAGA--AUCGCCAUUUGGCGUUGACAAUAUUUUUCUUUUAAAGAGACUUUUAAGCUGUCAGCGCUCGGUGCUCAUAAAAAUCGAC -----------------------....(((.((((((.--...(((....)))(((((((.......((((.....)))).........))))))).)))))).)))............ ( -24.89) >DroPer_CAF1 7243 112 - 1 AACAGAGCAGCCAACAACCACAAA-CAA----UCGAGA--AUCGCCAUUUGGCGUUGACAAUAUUUUUCAUGCUAAGAGACUUUUAAGCUGUCAACGCGCGGCGCUCAUAAAAAUCGAC ....((((.(((........((((-...----.((...--..))...))))(((((((((...........(((.(((....))).))))))))))))..)))))))............ ( -27.50) >consensus _______________________A_CGG____UCGAGA__AUCGCCAUUUGGCGUUGACAAUAUUUUUCAUGCUAAGAGACUUUUAAGCUGUCAACGCGCGGCGCUCAUAAAAAUCGAC ................................((((......((((.....(((((((((.....((((.......)))).........)))))))))..))))..........)))). (-19.10 = -18.46 + -0.64)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:48 2006