Locus 6867

Sequence ID X_DroMel_CAF1
Location 17,140,533 – 17,140,627
Length 94
Max. P 0.586370
window11238

overview

Window 8

Location 17,140,533 – 17,140,627
Length 94
Sequences 4
Columns 108
Reading direction reverse
Mean pairwise identity 85.07
Mean single sequence MFE -32.00
Consensus MFE -26.24
Energy contribution -25.93
Covariance contribution -0.31
Combinations/Pair 1.14
Mean z-score -1.48
Structure conservation index 0.82
SVM decision value 0.11
SVM RNA-class probability 0.586370
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17140533 94 - 22224390
---GUUGCUCGUUGCAUGGGCGCCAUUUGUAAUUCAAGUCAAAAGGCAACAGUCGGUGCUGUUGCUGUCGACGUGAUACCCUGCG--AGAAAGGGUAUU---------
---(.(((((((...))))))).).........(((.(((....(((((((((....)))))))))...))).)))((((((...--....))))))..--------- ( -31.50)
>DroSec_CAF1 3549 97 - 1
CUCGUUGCUCGUUGCAUGGGCGCCAUUUGUAAUUCAAGUCAAAAGGCAACAGUCGGUGCUGUUGCUGUCGACGUGAUACCCUGCG--AGAUAGGGUAUU---------
...(.(((((((...))))))).).........(((.(((....(((((((((....)))))))))...))).)))(((((((..--...)))))))..--------- ( -31.80)
>DroEre_CAF1 4498 91 - 1
---GGUGCUCGUUGCAUGGGCGCCAUUUGUAAUUCAAGUCAAAAGGC---AGGCGGCGUGGUUGCUGUCGACGUGAUACCCUGCG--GGAAAGGGUAUU---------
---(((((((((...))))))))).............(((....)))---.(((((((....))))))).....((((((((...--....))))))))--------- ( -33.80)
>DroYak_CAF1 5092 102 - 1
---GCUGCUCGUUGCAUGGGCGCCAUUUGUAAUUCAAGUCAAAAGGC---AGUUGGUGUUGUUGCUGCCGACGUGAUACCCUGCAAAAGAAAGGGUAUGCUACAUCUA
---(((((((.(((((.(((.(((.((((..........)))).)))---.((((((((....)).))))))......))))))))......))))).))........ ( -30.90)
>consensus
___GUUGCUCGUUGCAUGGGCGCCAUUUGUAAUUCAAGUCAAAAGGC___AGUCGGUGCUGUUGCUGUCGACGUGAUACCCUGCG__AGAAAGGGUAUU_________
......((((((...))))))(((.((((..........)))).)))....((((((((....)).))))))..((((((((.........))))))))......... (-26.24 = -25.93 +  -0.31)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:47 2006