| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 17,137,988 – 17,138,094 |
| Length | 106 |
| Max. P | 0.756251 |
| Location | 17,137,988 – 17,138,094 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 111 |
| Reading direction | forward |
| Mean pairwise identity | 75.17 |
| Mean single sequence MFE | -32.89 |
| Consensus MFE | -23.26 |
| Energy contribution | -21.18 |
| Covariance contribution | -2.08 |
| Combinations/Pair | 1.50 |
| Mean z-score | -1.11 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.49 |
| SVM RNA-class probability | 0.756251 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17137988 106 + 22224390 AUCAAAUUUUU---UCACAUUU--AUAGGAGCCUGCAGACGGCGGUGGGCUGCUAUCUGGACUUCUGCAGCUUACAGUCGCUGCCUUCGAUGAAGAUCGUCCAGGAGAAGC .......((((---((......--((((.((((..(........)..)))).))))((((((....(((((........)))))((((...))))...)))))))))))). ( -36.50) >DroGri_CAF1 1103 103 + 1 AUUCGCAUUUUGUGUU--------GCAGGAACUUGCAAACUGCCGUCGGUUGCUAUUUGGACUUUUGCAGUCUGCAGUCGUUGCCCUCAAUGAAGAUUGUCCAGGGGCAGC ....(((........)--------))..((...((((.(((((.(((.(........).)))....))))).)))).))((((((((((((....))))....)))))))) ( -30.30) >DroEre_CAF1 1937 106 + 1 AUCCCCACUUU---UCACAAUU--UUAGGAGCCUACAGAUGGCGGUCGGCUGCUAUCUGGACUUCUGCAGUUUACAGUCGCUGCCUUCAAUGAAGAUCGUCCAGGGAAAGC .((((.(((((---(((.....--..(((((....((((((((((....))))))))))..)))))(((((........)))))......))))))..))...)))).... ( -33.30) >DroYak_CAF1 2512 106 + 1 AUCGUCAUAUU---UCACAAUU--UUAGGAGCCUGCAGAUGGCGGUCGGCUGCUAUCUGGACUUCUGCAGUUUACAGUCGCUGCCCUCGAUGAAGAUCGUCCAGGGAAAGC .........((---((......--..(((((..(.((((((((((....)))))))))).))))))(((((........)))))(((.((((.....)))).))))))).. ( -33.90) >DroMoj_CAF1 990 111 + 1 ACCCUCAUUUUGUUUCCCAUUUGGUCAGGAACUUGCAAACUGCCGUCGGUUGUUACCUGGACUUCUGUAGUCUGCAAUCAUUGCCUUCGAUGAAGAUUGUGCAGGGCCAGC .(((((((...((((..((((.(((...((..(((((.(((((.((((((....)))..)))....))))).)))))))...)))...)))).)))).))).))))..... ( -28.20) >DroPer_CAF1 515 103 + 1 -----CAUUUU---CCUGAUUCCCAAAGGAGUCUGCAAACAGCCGUCGGCUGCUACUUGGACUUUUGCAGCCUGCAGUCGCUGCCAUCGAUGAAGAUCGUCCAGGGGCAGC -----.....(---(((.........))))(.(((((.((....)).((((((.............))))))))))).)((((((...((((.....))))....)))))) ( -35.12) >consensus AUCCUCAUUUU___UCACAUUU__UUAGGAGCCUGCAAACGGCCGUCGGCUGCUAUCUGGACUUCUGCAGUCUACAGUCGCUGCCUUCGAUGAAGAUCGUCCAGGGGAAGC ..........................((.((((.((........)).)))).)).(((((((....(((((........)))))..((......))..)))))))...... (-23.26 = -21.18 + -2.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:46 2006