Sequence ID | X_DroMel_CAF1 |
---|---|
Location | 17,135,727 – 17,135,847 |
Length | 120 |
Max. P | 0.883188 |
Location | 17,135,727 – 17,135,847 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 96.67 |
Mean single sequence MFE | -28.60 |
Consensus MFE | -27.93 |
Energy contribution | -28.27 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -1.96 |
Structure conservation index | 0.98 |
SVM decision value | 0.93 |
SVM RNA-class probability | 0.883188 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17135727 120 - 22224390 GUUAAACAUCUAACAAAAGCGCUUCGCACGCACAGCAAACCGGUCGAUUCCGAAUUCAGACGUGCUAAAUAACGUUUGAAAACAAAAUUUGCUCGGUUGACGUUGUAAAUAACAACACGG ((((......))))....(((.......)))........((((((((..((((.(((((((((........)))))))))..((.....)).)))))))))(((((.....))))).))) ( -29.60) >DroSim_CAF1 642 120 - 1 GUUAAACAUCUAACAAAAGCGCUUCGCACGCACAGCAAACCGGUCGAUUCCGAAUUCAGACGUGCUAAAUAACGUUUGAAAACAAAAUUUGCUCGGUUGAAGUUGUAAAUAACAACACGG ((((..............(((.......)))(((((.(((((((.((((.....(((((((((........))))))))).....)))).)).)))))...)))))...))))....... ( -29.00) >DroYak_CAF1 572 120 - 1 GUUAAACAUAUAACAAAAGCGCUUCGCACGCACAGCAAACCGGUCGAUUCCGAAUUCAGACGUGCUUAAUAACGUUUGUAAGCAAAAUUUGCUCGGUUGAAGUUGUAAAUAACAACACGA ((((..............(((.......)))(((((.(((((((.((((..(....(((((((........)))))))....)..)))).)).)))))...)))))...))))....... ( -27.20) >consensus GUUAAACAUCUAACAAAAGCGCUUCGCACGCACAGCAAACCGGUCGAUUCCGAAUUCAGACGUGCUAAAUAACGUUUGAAAACAAAAUUUGCUCGGUUGAAGUUGUAAAUAACAACACGG ((((..............(((.......)))(((((.(((((((.((((..(..(((((((((........)))))))))..)..)))).)).)))))...)))))...))))....... (-27.93 = -28.27 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:45 2006