| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 17,134,917 – 17,135,018 |
| Length | 101 |
| Max. P | 0.633125 |
| Location | 17,134,917 – 17,135,018 |
|---|---|
| Length | 101 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 72.11 |
| Mean single sequence MFE | -34.11 |
| Consensus MFE | -16.79 |
| Energy contribution | -16.02 |
| Covariance contribution | -0.77 |
| Combinations/Pair | 1.18 |
| Mean z-score | -2.11 |
| Structure conservation index | 0.49 |
| SVM decision value | 0.21 |
| SVM RNA-class probability | 0.633125 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 17134917 101 - 22224390 AGCGAAGAAGAAGCAGUGGCGGGGGCAGCAGGAGCAGGAGAAGAACAGAGUCGG------------ACUUUGAAAGGGUCUUACCACUCCGAUUUUAGUUCAUGUUCUUGCUU------- .((.........)).((.((....)).))..(((((((((..((((((((((((------------(((.....))((.....))..))))))))).))))...)))))))))------- ( -30.00) >DroEre_CAF1 17108 115 - 1 AGAGAAGAAGAAGCAGGGGCGG-GGAAGAAGGAGCAGGAGGAAAACAGAGGCGGACCUAAAGUUGAACUUUGAAGGGGUCCUGCCACUUUGUUUCUAAUUCAUUCGCCUGUUUUUA---- ........(((((((..(((((-((((..(((((((((.(.....)...(((((((((((((.....))))....)))))).)))..)))))))))..))).))))))))))))).---- ( -38.20) >DroYak_CAF1 17571 119 - 1 AGUGACGAAGAAGCAGGGGCGG-GGAAGAAGGAGCAGGAGGGGAACAGAGGCAGCUCUAAGGUUUAACUUUGAAGGGGUCUUACCUCUCUGUUUUUAAGUCAUUCAUUUGAUUUUAUUUG ((((((..(((((((((((.((-..((((.......((((..((((((((....))))...))))..)))).......)))).)))))))))))))..))))))................ ( -34.14) >consensus AGAGAAGAAGAAGCAGGGGCGG_GGAAGAAGGAGCAGGAGGAGAACAGAGGCGG__CUAA_GUU_AACUUUGAAGGGGUCUUACCACUCUGUUUUUAAUUCAUUCACUUGAUUUUA____ ...(((..((((((....((.............)).((((.....(((((.................)))))...((......)).))))))))))..)))................... (-16.79 = -16.02 + -0.77)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:44 2006