Locus 6862

Sequence ID X_DroMel_CAF1
Location 17,120,758 – 17,120,852
Length 94
Max. P 0.500000
window11231

overview

Window 1

Location 17,120,758 – 17,120,852
Length 94
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 81.37
Mean single sequence MFE -30.45
Consensus MFE -21.00
Energy contribution -21.37
Covariance contribution 0.36
Combinations/Pair 1.30
Mean z-score -1.26
Structure conservation index 0.69
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17120758 94 + 22224390
GGGCGCCGAUCUUGCGGGCCAUGGAGAUGGCAUACUUGGCAUUGGCCAGGUUAUCCUGCGG----AAUCAAUAA-GCGCUAGUUUAGUCUGCCAC--AUAU
.(((...(((..((((((((((....)))))..(((((((....)))))))....))))).----.)))..(((-((....)))))....)))..--.... ( -33.90)
>DroPse_CAF1 166 94 + 1
GGGCACCGAUCUUGCGGGCCAUGGAGAUGGCGUACUUGGCAUUGGCCAGAUUGUCCUGCGGGAAUAAUCAAUAA----UGAGUAUCAUUUGCCAC--CUG-
.(((((((......)))(((((....)))))(((((((((....))).((((((((....)).)))))).....----.))))))....))))..--...- ( -30.80)
>DroSim_CAF1 3103 94 + 1
GGGCGCCAAUCUUGCGAGCCAUGGAGAUGGCAUACUUGGCAUUGGCCAGGUUAUCCUGCGG----AAUCAAUAA-GCGUUAGUUUAGCCUGCCAC--AUUU
.(((((((((((.....(((((....)))))......)).)))))).((((((..(((((.----.........-.)).)))..)))))))))..--.... ( -29.50)
>DroEre_CAF1 2975 94 + 1
GGGCGCCGAUCUUGCGGGCCAUGGAGAUGGCAUACUUGGCAUUGGCCAGGUUAUCCUGCGC----AAUUGAUAA-GCGUUAGUUAAGCCGGCCAC--AUUU
.(((.(((......)))))).(((...((((..(((((((....)))))))....((((((----.........-))).)))....)))).))).--.... ( -32.30)
>DroYak_CAF1 3168 95 + 1
GGGCGCCGAUCUUGCGGGCCAUGGAAAUGGCAUACUUGGCAUUGGCCAGGUUAUCCUGCGA----AAUCAAAAAGGCAUUAGUUCAGCUUAUCAC--AUUU
((((((((((.(((((((((((....)))))..(((((((....)))))))....))))))----.))).....)))....))))..........--.... ( -31.90)
>DroAna_CAF1 4505 94 + 1
GGGCGCCGAUCUUGCGGGCCAUGGAGAUGGCGUACUUGGCAUUGGCCAGGUUGUCCUACAA----AACACACAA-U-AUUAA-UAAUUCUGUCAUUAAUCU
((((.(((......)))(((((....)))))..(((((((....))))))).)))).....----.........-.-.....-.................. ( -24.30)
>consensus
GGGCGCCGAUCUUGCGGGCCAUGGAGAUGGCAUACUUGGCAUUGGCCAGGUUAUCCUGCGG____AAUCAAUAA_GCGUUAGUUUAGCCUGCCAC__AUUU
.(((........((((((((((....)))))..(((((((....)))))))....))))).................(((.....)))..)))........ (-21.00 = -21.37 +   0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:40 2006