Locus 6861

Sequence ID X_DroMel_CAF1
Location 17,113,900 – 17,114,020
Length 120
Max. P 0.693815
window11230

overview

Window 0

Location 17,113,900 – 17,114,020
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 98.33
Mean single sequence MFE -51.07
Consensus MFE -50.50
Energy contribution -50.50
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -1.58
Structure conservation index 0.99
SVM decision value 0.34
SVM RNA-class probability 0.693815
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17113900 120 + 22224390
GGGGAGUCUCCUGACCCCUGGCCUCAAUUGUCUGACCUUCUUCUAGGGCGGCCAUCUAUACGCCCAAGGUGGAGGAGAACAACCGGGUGGCGGACACCUGGCGGCUGAAGAACCGCGCCA
((((.(((....)))))))(((.....((((((..(((((.(((.(((((..........))))).))).))))))).)))).((((((.....))))))((((........))))))). ( -50.50)
>DroEre_CAF1 649 120 + 1
GGGGAGUCUCCUGACCCCUGGCCUCAAUUGUCUGACCUUCUUCUAGGGCGGCCAUCUACACGCCCAAGGUGGAGGAGAACAACCGGGUGGCGGACACCUGGCGGCUCAAGAACCGCGCCA
((((.(((....)))))))(((.....((((((..(((((.(((.(((((..........))))).))).))))))).)))).((((((.....))))))((((........))))))). ( -50.50)
>DroYak_CAF1 675 120 + 1
GGGGAGUCUCCUGACCCCUGGCCUCAAUUGUCUCACCUUCUUCUAGGGCGGCCAUCUACACGCCCAAGGUGGAGGAGAACAACCGGGUGGCGGACACCUGGCGGCUGAAGAACCGCGCCA
((((.(((....)))))))(((.....((((.((.(((((.(((.(((((..........))))).))).))))).)))))).((((((.....))))))((((........))))))). ( -52.20)
>consensus
GGGGAGUCUCCUGACCCCUGGCCUCAAUUGUCUGACCUUCUUCUAGGGCGGCCAUCUACACGCCCAAGGUGGAGGAGAACAACCGGGUGGCGGACACCUGGCGGCUGAAGAACCGCGCCA
((((.(((....)))))))(((.....((((((..(((((.(((.(((((..........))))).))).))))))).)))).((((((.....))))))((((........))))))). (-50.50 = -50.50 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:39 2006