Locus 6860

Sequence ID X_DroMel_CAF1
Location 17,109,385 – 17,109,492
Length 107
Max. P 0.956595
window11229

overview

Window 9

Location 17,109,385 – 17,109,492
Length 107
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 75.41
Mean single sequence MFE -34.20
Consensus MFE -26.53
Energy contribution -26.53
Covariance contribution 0.00
Combinations/Pair 1.25
Mean z-score -1.54
Structure conservation index 0.78
SVM decision value 1.47
SVM RNA-class probability 0.956595
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 17109385 107 + 22224390
UCUCCAAUG--CGAUCCGUCGUCAUGGUCUUGGGUGAAUAACUUUGGCGAUGGCUUGAACCCAGUUCAGGCUGCCAACGGAGCUCGCCCAGGCAACAUCGUCAC-CCGGA
.........--...((((..((.((((((((((((((.(..(.(((((...(((((((((...)))))))))))))).)..).)))))))))....))))).))-.)))) ( -39.00)
>DroPse_CAF1 5025 92 + 1
--GCUGUUC--CGAUCC------ACUGUCUUGGGUGAAUAACUUUGUCGAUCGCCUGAACUUGCAUCAGGCUGCCAGCGACGUUCGCCCAGGCAACAUCGUC--------
--.......--((((..------..(((((.((((((((......((((...((((((.......))))))......)))))))))))))))))..))))..-------- ( -31.10)
>DroEre_CAF1 3749 108 + 1
UCUCCAAUG--CGAUCCGUCGUCAUGGUCUUGGGUGAAUAACUUUGGCGAUGGCUUGAACCCAGUUCAGGCUGCCAACGGAGCUCGCCCAGGCAACAUCGUCAACCUCGA
...(((..(--(((....))))..))).(((((((((.(..(.(((((...(((((((((...)))))))))))))).)..).))))))))).....(((.......))) ( -36.90)
>DroWil_CAF1 4565 96 + 1
UGUCGAAUGGUUGAUG------GUUCGUCUUGGGUGAACAACUUUGGCAAUAGCUUGAACUCACUUCAGGCUGCCAACAGCAUUCGGCCGGAUAACAUCGUA--------
.((((((((.(((...------((((..(...)..))))....((((((...(((((((.....))))))))))))))))))))))))..............-------- ( -30.40)
>DroYak_CAF1 3904 106 + 1
UCUCCAAUG--CGAUCCGUCGUCAUGGUCUUGGGUGAAUAACUUUGGCGAUGGCUUGAACCCAGUUCAGGCUGCCAACGGAGCUCGCCCAGGCAACAUCGUCAC--CCGA
...(((..(--(((....))))..))).(((((((((.(..(.(((((...(((((((((...)))))))))))))).)..).)))))))))............--.... ( -36.70)
>DroPer_CAF1 5043 92 + 1
--GCUGUUC--CGAUCC------ACUGUCUUGGGUGAAUAACUUUGUCGAUCGCCUGAACUUGCAUCAGGCUGCCAGCGACGUUCGCCCAGGCAACAUCGUC--------
--.......--((((..------..(((((.((((((((......((((...((((((.......))))))......)))))))))))))))))..))))..-------- ( -31.10)
>consensus
UCUCCAAUG__CGAUCC_____CAUGGUCUUGGGUGAAUAACUUUGGCGAUGGCUUGAACCCACUUCAGGCUGCCAACGGAGCUCGCCCAGGCAACAUCGUC________
..........................((((.((((((....(.((((((...(((((((.....))))))))))))).)....))))))))))................. (-26.53 = -26.53 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:24:38 2006